| Literature DB >> 32612891 |
Mitch D Weegman1, Scott Wilson2,3, Ray T Alisauskas4,5, Dana K Kellett4,5.
Abstract
Joint encounter (JE) models estimate demographic rates using live recapture and dead recovery data. The extent to which limited recapture or recovery data can hinder estimation in JE models is not completely understood. Yet limited data are common in ecological research. We designed a series of simulations using Bayesian multistate JE models that spanned a large range of potential recapture probabilities (0.01-0.90) and two reported mortality probabilities (0.10, 0.19). We calculated bias by comparing estimates against known probabilities of survival, fidelity and reported mortality. We explored whether sparse data (i.e., recapture probabilities <0.02) compromised inference about survival by comparing estimates from dead recovery (DR) and JE models using an 18-year data set from a migratory bird, the lesser snow goose (Anser caerulescens caerulescens). Our simulations showed that bias in probabilities of survival, fidelity and reported mortality was relatively low across a large range of recapture probabilities, except when recapture and reported mortality probabilities were both lowest. While bias in fidelity probability was similar across all recapture probabilities, the root mean square error declined substantially with increased recapture probabilities for reported mortality probabilities of 0.10 or 0.19, as expected. In our case study, annual survival probabilities for adult female snow geese were similar whether estimated with JE or DR models, but more precise from JE models than those from DR models. Thus, our simulated and empirical data suggest acceptably minimal bias in survival, fidelity or reported mortality probabilities estimated from JE models. Even a small amount of recapture information provided adequate structure for JE models, except when reported mortality probabilities were <0.10. Thus, practitioners with limited recapture data should not be discouraged from use of JE models. We recommend that ecologists incorporate other data types as frequently as analytically possible, since precision of focal parameters is improved, and additional parameters of interest can be estimated.Entities:
Keywords: Avian ecology; Bayesian multistate joint encounter model; Capture history; Dead recovery model; M-array; Simulated data; Snow goose
Year: 2020 PMID: 32612891 PMCID: PMC7319022 DOI: 10.7717/peerj.9382
Source DB: PubMed Journal: PeerJ ISSN: 2167-8359 Impact factor: 2.984
The state transition matrix associated with our simulations representing probabilities of transitioning from a true state at time t to a true state at time t + 1.
Parameters included survival (S), fidelity (F) and reported mortality (r) probability.
| True state at time | True state at time | |||
|---|---|---|---|---|
| Alive, inside | Alive, outside | Recently dead | Dead | |
| Alive, inside | SF | (1 − | (1 − | |
| Alive, outside | 0 | (1 − | (1 − | |
| Recently dead | 0 | 0 | 0 | 1 |
| Dead | 0 | 0 | 0 | 1 |
The observation matrix associated with our simulations representing the linkage between true and observed states at time t, and including parameter recapture probability (p).
| True state at time | Observed state at time | ||
|---|---|---|---|
| Seen alive | Recovered dead | Not seen or recovered | |
| Alive, inside | 0 | 1 − | |
| Alive, outside | 0 | 0 | 1 |
| Recently dead | 0 | 1 | 0 |
| Dead | 0 | 0 | 1 |
The number of snow goose captures (releases), recaptures and recoveries per year, 1997–2014, near Karrak Lake, Nunavut, Canada.
| Year | Captures | Recaptures | Recoveries |
|---|---|---|---|
| 1997 | 384 | 0 | 0 |
| 1998 | 808 | 1 | 5 |
| 1999 | 383 | 15 | 22 |
| 2000 | 522 | 11 | 33 |
| 2001 | 576 | 21 | 44 |
| 2002 | 502 | 18 | 47 |
| 2003 | 1373 | 16 | 48 |
| 2004 | 1773 | 43 | 71 |
| 2005 | 1410 | 90 | 109 |
| 2006 | 555 | 46 | 112 |
| 2007 | 1323 | 56 | 93 |
| 2008 | 1134 | 57 | 115 |
| 2009 | 1252 | 90 | 115 |
| 2010 | 1692 | 105 | 91 |
| 2011 | 1255 | 45 | 151 |
| 2012 | 1077 | 79 | 152 |
| 2013 | 1081 | 80 | 188 |
| 2014 | 1309 | 119 | 192 |
Figure 1Bias and root mean square error (RMSE) in estimates of survival, S (A and D), fidelity, F (B and E) and reported mortality, r (C and F) probabilities across recapture and reported mortality probabilities.
For each recapture probability (e.g., p = 0.01), results from JE models with each reported mortality probability are presented; lighter and darker boxes represent r = 0.10 and 0.19 respectively. Each box comprises the 25th, 50th and 75th percentiles. Whiskers represent the minimum and maximum range. Minimum range was calculated as the 25th percentile − 1.5 × inner quartile range (IQR; that is, from the 25th to 75th percentile). Maximum range was calculated as the 75th percentile + 1.5 × IQR. The points outside of the whiskers were considered outliers. Horizontal lines represent 0 bias.
Figure 2Survival (A), fidelity (B), recapture and reported mortality (C) probabilities estimated for lesser snow geese from 1997 to 2014 using JE (S, F, r and p) and DR (S and r) models.
The JE and DR models were used to quantify whether precision of DR estimates could be improved by JE estimates despite low recapture probabilities (e.g., p = 0.02).