| Literature DB >> 32612602 |
Guangnian Yin1,2, Wenxin Zeng1,2, Kaijiao Hu1,2, Jie Gao1,2, Jianping Liu3, Yan Chen4, Feilan Chen1,2.
Abstract
Purpose: Previous studies have shown that parental abnormal physiological conditions such as inflammation, stress, and obesity can be transferred to offspring. The purpose of this study was to investigate the impact of parental uveitis on the development and susceptibility to experimental autoimmune uveitis (EAU) in offspring.Entities:
Keywords: differentially expressed gene (DEG); experimental autoimmune uveitis (EAU); immune system; offspring; parental uveitis; susceptibility
Mesh:
Substances:
Year: 2020 PMID: 32612602 PMCID: PMC7308830 DOI: 10.3389/fimmu.2020.01053
Source DB: PubMed Journal: Front Immunol ISSN: 1664-3224 Impact factor: 7.561
Figure 1Hair appearance and histopathology (H&E) in B10R III mice. (A) Schematic illustration showing the workflow of gross and pathological examinations. (B) Normal hair in the healthy control group. (C) Hair loss in the F1 offspring gestated in parents with uveitis at day 17 and (D) day 35 after birth; (E) healthy skin at day 29; (F) the increased number of hair follicles in the subcutaneous tissue of F1 offspring at day 29 compared with the healthy control group (arrow).
Figure 2Principal component analysis (PCA) and heatmap of the differentially expressed genes (DEGs) in different samples. (A) Schematic illustration showing the workflow of RNA-seq of the eye. (B) PCA showing that the eye tissues from the same group clustered together. (C) The heatmap shows that the expression patterns were significantly different in the eyes of the affected offspring compared with those of the control. EE, Eyes in the experimental group. EC, Eyes in the healthy control group.
Figure 3Volcano plot and gene ontology of the DEGs. (A) Volcano plot of the DEGs shows 363 upregulated genes (red dots) and 30 downregulated genes (blue dots) in the eyes of affected offspring compared with the control group. (B) Gene ontology of the 393 DEGs are involved in top 26 biological processes, 16 cellular components, and 11 molecular functions. The lower and upper abscissae show the numbers and ratios of annotated DEGs, respectively. The ordinate shows the categories of differential expression genes according to biological process, cellular components, and molecular function.
The top 20 differently expressed genes (DEGs) in eye from offspring gestated in parental uveitis.
| Disp2 | Dispatched RND tramsporter family member 2 | 2.04E-20 | 3.827775 |
| Myh4 | Myosin, heavy polypeptide 4, skeletal muscle | 5.78E-16 | 6.218476 |
| Tnnc2 | Troponin C2, fast | 3.63E-13 | 5.674978 |
| Myl1 | Myosin, light polypeptide 1 | 3.27E-11 | 4.758568 |
| Actc1 | Actin, alpha, cardiac muscle 1 | 1.05E-10 | 5.672237 |
| Acta1 | Actin, alpha 1, skeletal muscle | 1.19E-10 | 6.009902 |
| Myh2 | Myosin, heavy polypeptide 2, skeletal muscle, adult | 1.78E-09 | 6.611344 |
| Mb | Myoglobin | 2.33E-09 | 5.51296 |
| H2-Ab1 | Histocompatibility 2, class II antigen A, beta 1 | 8.42E-09 | 3.862867 |
| Mylpf | Myosin regulatory light chain 2, skeletal muscle isoform | 1.10E-08 | 4.642088 |
| Tcap | Titin-cap | 2.14E-08 | 5.51826 |
| Gm3055 | Predicted gene 3055 | 2.14E-08 | 3.09705 |
| 2810047C21Rik1 | RIKEN cDNA 2810047C21 gene 1 | 2.35E-08 | 2.617525 |
| Tnnt3 | Troponin T3, skeletal, fast | 2.35E-08 | 5.690388 |
| Cox6a2 | Cytochrome c oxidase subunit 6A2, mitochondrial | 3.22E-08 | 4.887749 |
| 9430073C21Rik | Riken cDNA 9430073C21 gene | 4.26E-08 | 3.365613 |
| Atp2a1 | ATPase, Ca++ transporting, cardiac muscle, fast twitch 1 | 4.73E-08 | 7.017263 |
| Art1 | ADP-ribosyltransferase 1 | 4.73E-08 | 3.497512 |
| Rdh18-ps | Retinol dehydrogenase 18, pseudogene | 4.73E-08 | 3.606664 |
| Tcf4 | Transcription factor 4 | 6.22E-08 | 2.30283 |
FDR, false discovery rate; FC, fold change.
The top 7 function enrichment of different genes in eye from offspring gestated in parental uveitis.
| Immune system process | 0 | 88 | Abcc9, Alas2, Ank1, Apbb1ip, Apod, B2m, C1qa, C1qc, C1ra, Ccl11, Ccr2, Cd19, Cd274, Cd36, Cd74, Cfh, Ch25h, Col3a1, Creb1, Ctss, Cxcl12, Cxcl2, Dapk2, Epb42, Ets1, Flt1, Gbp3, Gbp4, Gbp7, Gbp9, Gm20547, Gm43302, Grap2, H2-Aa, H2-Ab1, H2-Q4, H2-Q6, H2-T24, Hba-a1, Hba-a2, Hrh2, Ifit1, Ifit1bl1, Iigp1, Il16, Inpp4b, Isg15, Isg20, Itgb2, Itgb3, Lcp1, Mb, Mpp1, Mylpf, Oasl2, Pagr1a, Parp14, Pf4, Pglyrp4, Ppbp, Ptprc, Rab3c, Rac2, Rbfox2, Rhag, Rora, Rps6ka3, Rsad2, Sfrp2, Six1, Snca, Sox6, Sp110, Spib, Stxbp1, Tgfbr2, Tgtp1, Tgtp2, Thbs4, Themis2, Tlr4, Tnf, Trim10, Trim30a, Trim58, Was, Wnt2b, Zfp36 |
| Muscle system process | 0 | 33 | Acta1, Actc1, Atp2a1, Atp2b4, Calcrl, Col14a1, Csrp3, Hrc, Jsrp1, Kcna1, Kcnma1, Lmod2, Mb, Myh1, Myh2, Myh3, Myh4, Myh7, Myh8, Myl1, Mylk2, Myoc, Nos1, Ryr1, Scn4b, Smpx, Srl, Tcap, Tnnc2, Tnni2, Tnnt3, Trdn, Ttn |
| Cytoskeletal protein binding | 0 | 50 | Actc1, Ank1, Arl4c, Clmn, Csrp3, Des, Dnm3, Flnc, Hspb7, Kcnc1, Kcnma1, Kif5a, Lcp1, Ldb3, Lmod2, Mapt, Myh1, Myh13, Myh15, Myh2, Myh3, Myh4, Myh7, Myh8, Myo7b, Myoc, Myot, Myoz1, Myoz2, Neb, Nrap, Phactr1, Ptprt, Rab3c, Rcan3, Rhag, Slc4a1, Smtnl1, Snca, Synpo2l, Tcap, Tnnc2, Tnni2, Tnnt3, Tppp, Trim54, Ttn, Was, Wipf1, Xirp2 |
| Actin cytoskeleton | 0 | 35 | Acta1, Actc1, Flnc, Flt1, Hspb7, Lcp1, Lmod2, Myadm, Myh1, Myh13, Myh15, Myh2, Myh3, Myh4, Myh7, Myh8, Myl1, Mylpf, Myo7b, Myoz1, Myoz2, Neb, Peak1, Rac2, Sept2, Snca, Srcin1, Synpo2l, Tnnc2, Tnni2, Tnnt3, Ttn, Was, Wipf1, Xirp2 |
| Supramolecular complex | 0 | 53 | Abcc9, Acta1, Actc1, Ank1, Atp2a1, Atp2b4, Col3a1, Csrp3, Dcn, Des, Dnm3, Flnc, Hrc, Kif5a, Lcp1, Ldb3, Lmod2, Mapt, Myh1, Myh13, Myh2, Myh3, Myh4, Myh7, Myh8, Myl1, Myom3, Myot, Myoz1, Myoz2, Neb, Nos1, Nrap, Obscn, Rac2, Ryr1, Sept2, Slc4a1, Smpx, Smtnl1, Snca, Synpo2l, Tcap, Tnnc2, Tnni2, Tnnt3, Tppp, Trim54, Ttn, Tubb1, Was, Wipf1, Xirp2 |
| Supramolecular polymer | 0 | 53 | Abcc9, Acta1, Actc1, Ank1, Atp2a1, Atp2b4, Col3a1, Csrp3, Dcn, Des, Dnm3, Flnc, Hrc, Kif5a, Lcp1, Ldb3, Lmod2, Mapt, Myh1, Myh13, Myh2, Myh3, Myh4, Myh7, Myh8, Myl1, Myom3, Myot, Myoz1, Myoz2, Neb, Nos1, Nrap, Obscn, Rac2, Ryr1, Sept2, Slc4a1, Smpx, Smtnl1, Snca, Synpo2l, Tcap, Tnnc2, Tnni2, Tnnt3, Tppp, Trim54, Ttn, Tubb1, Was, Wipf1, Xirp2 |
| Supramolecular fiber | 0 | 53 | Abcc9, Acta1, Actc1, Ank1, Atp2a1, Atp2b4, Col3a1, Csrp3, Dcn, Des, Dnm3, Flnc, Hrc, Kif5a, Lcp1, Ldb3, Lmod2, Mapt, Myh1, Myh13, Myh2, Myh3, Myh4, Myh7, Myh8, Myl1, Myom3, Myot, Myoz1, Myoz2, Neb, Nos1, Nrap, Obscn, Rac2, Ryr1, Sept2, Slc4a1, Smpx, Smtnl1, Snca, Synpo2l, Tcap, Tnnc2, Tnni2, Tnnt3, Tppp, Trim54, Ttn, Tubb1, Was, Wipf1, Xirp2 |
FDR, False discovery rate; No, Number.
Enrichment of different genes on multiple immune system process in eye from offspring gestated in parental uveitis.
| Immune response | 6.21E-09 | 54 | Apbb1ip, B2m, C1qa, C1qc, C1ra, Ccl11, Ccr2, Cd19, Cd274, Cd36, Cd74, Cfh, Col3a1, Ctss, Cxcl12, Cxcl2, Gbp3, Gbp4, Gbp7, Gbp9, Gm20547, Gm43302, Grap2, H2-Aa, H2-Ab1, Hrh2, Ifit1, Iigp1, Isg15, Isg20, Lcp1, Mylpf, Oasl2, Pagr1a, Parp14, Pf4, Pglyrp4, Ppbp, Ptprc, Rac2, Rora, Rps6ka3, Rsad2, Snca, Sp110, Stxbp1, Tgtp1, Tgtp2, Themis2, Tlr4, Tnf, Trim10, Trim30a, Was |
| Response to external stimulus | 1.74E-08 | 74 | Abcc9, Acta1, Apod, B2m, Calcrl, Ccl11, Ccr2, Cd36, Cd74, Cfh, Ch25h, Cmpk2, Cntn2, Col3a1, Creb1, Csrp3, Ctss, Cxcl12, Cxcl2, Dapk2, Dcc, Dclk1, Dcn, Epha5, Ets1, Flt1, Gbp3, Gbp4, Gbp7, Gbp9, Gm43302, Ifi27l2a, Ifit1, Ifit1bl1, Iigp1, Il16, Isg15, Isg20, Itgb3, Kcna1, Kcnc1, Kif5a, Lyz2, Mpp1, Myh13, Nrxn1, Oasl2, Pf4, Pglyrp4, Postn, Ppbp, Rac2, Rora, Rps6ka3, Rsad2, Scd1, Sfrp2, Snca, Sp110, Tbr1, Tcap, Tgfbr2, Tgtp1, Tgtp2, Thbs4, Tlr4, Tnf, Tnr, Trim30a, Tspan8, Ttn, Wipf1, Wnt2b, Zfp36 |
| Defense response | 9.09E-08 | 54 | ts1, Gbp3, Gbp4, Gbp7, Gbp9, Gm43302, Grap2, H2-Aa, H2-Ab1, Ifi47, Ifit1, Ifit1bl1, Iigp1, Isg15, Isg20, Itgb2, Lyz2, Oasl2, Parp14, Pf4, Pglyrp4, Ppbp, Rora, Rps6ka3, Rsad2, Scd1, Snca, Sp110, Stxbp1, Tgtp1, Tgtp2, Themis2, Tlr4, Tnf, Trim10, Trim30a, Was, Zfp36 |
| Regulation of immune system process | 4.63E-07 | 47 | Apod, B2m, C1qa, C1qc, C1ra, Ccr2, Cd19, Cd274, Cd36, Cd74, Cfh, Col3a1, Creb1, Cxcl12, Cxcl2, Dapk2, Ets1, Gbp4, Gm20547, H2-Aa, H2-Ab1, Inpp4b, Isg15, Itgb3, Mpp1, Pagr1a, Parp14, Pf4, Pglyrp4, Ppbp, Ptprc, Rac2, Rbfox2, Rora, Rps6ka3, Rsad2, Snca, Stxbp1, Tgfbr2, Thbs4, Themis2, Tlr4, Tnf, Trim30a, Trim58, Was, Zfp36 |
| Response to cytokine | 1.31E-06 | 39 | Aa, H2-Ab1, Ifi209, Ifi47, Ifit1, Iigp1, Isg15, Laptm5, Parp14, Pf4, Postn, Ppbp, Rora, Snca, Stxbp1, Tgtp1, Tgtp2, Tnf, Was, Zfp36 |
| Innate immune response | 1.52E-06 | 33 | C1qa, C1qc, C1ra, Ccl11, Cd36, Cd74, Cfh, Gbp3, Gbp4, Gbp7, Gbp9, Gm43302, Grap2, H2-Aa, H2-Ab1, Ifit1, Iigp1, Isg15, Isg20, Oasl2, Parp14, Pglyrp4, Rps6ka3, Rsad2, Snca, Sp110, Stxbp1, Tgtp1, Tgtp2, Tlr4, Trim10, Trim30a, Was |
| Positive regulation of immune system process | 1.95E-06 | 36 | B2m, C1qa, C1qc, C1ra, Ccr2, Cd19, Cd274, Cd36, Cd74, Cfh, Creb1, Cxcl12, Cxcl2, Dapk2, Ets1, Gm20547, H2-Aa, H2-Ab1, Isg15, Itgb3, Pagr1a, Pf4, Pglyrp4, Ppbp, Ptprc, Rac2, Rps6ka3, Rsad2, Stxbp1, Tgfbr2, Thbs4, Themis2, Tlr4, Tnf, Trim30a, Trim58 |
| Response to interferon-gamma | 7.53E-06 | 14 | Ccl11, Gbp3, Gbp4, Gbp7, Gbp9, Gm43302, H2-Aa, H2-Ab1, Parp14, Snca, Stxbp1, Tgtp1, Tgtp2, Was |
| Regulation of response to stimulus | 1.66E-05 | 93 | ora, Rps6ka3, Rsad2, Sept2, Sfrp2, Snca, Sp100, Srl, Stxbp1, Syt4, Tbr1, Tcf4, Tgfbr2, Thbs4, Themis2, Tlr4, Tnf, Tnr, Trdn, Trim30a, Tspan8, Was, Wnt2b, Wnt7a, Xdh, Zfp36 |
| Response to stimulus | 1.90E-05 | 193 | bt, Hfe2, Hrc, Hrh2, Htr1b, Ifi209, Ifi27l2a, Ifi47, Ifit1, Ifit1bl1, Iigp1, Il16, Inpp4b, Isg15, Isg20, Itgam, Itgb2, Itgb3, Jsrp1, Kcna1, Kcnc1, Kcnd2, Kcnma1, Kdr, Kif5a, Laptm5, Lcp1, Lyz2, Mapt, Mb, Mmrn1, Mpp1, Myadm, Myh13, Myh2, Myh4, Myh7, Mylk2, Mylpf, Myoc, Ndrg4, Nos1, Nrxn1, Oasl2, Obscn, Pagr1a, Pak3, Parp14, Pde11a, Pf4, Pglyrp4, Pgr, Postn, Pou3f2, Ppbp, Ppp1r15a, Ptprc, Ptprn2, Ptprt, Rac2, Rasgrp3, Rbfox2, Rcan3, Retnla, Rhag, Rora, Rps6ka3, Rsad2, Ryr1, Scd1, Sept2, Sfrp2, Six1, Slc1a1, Slc6a14, Slfn14, Smtnl1, Snca, Sox6, Sp100, Sp110, Sparcl1, Srl, Stxbp1, Syt4, Tbr1, Tcap, Tcf4, Tgfbr2, Tgtp1, Tgtp2, Thbs4, Themis2, Tlr4, Tnf, Tnmd, Tnr, Trdn, Trim10, Trim30a, Tspan8, Ttn, Was, Wipf1, Wnt2b, Wnt7a, Xdh,Zfp36 |
| Immune effector process | 2.44E-05 | 29 | Gm20547, H2-Ab1, Ifit1, Ifit1bl1, Isg15, Isg20, Lcp1, Oasl2, Pagr1a, Pglyrp4, Rac2, Rora, Rsad2, Stxbp1, Tlr4, Tnf, Trim30a, Was |
| Cellular response to cytokine stimulus | 5.30E-05 | 32 | Ab1, Ifi209, Ifi47, Ifit1, Iigp1, Laptm5, Parp14, Pf4, Postn, Ppbp, Rora, Stxbp1, Tgtp1, Tgtp2, Tnf, Was, Zfp36 |
| MHC protein complex | 5.40E-05 | 6 | B2m, Cd74, H2-Aa, H2-Ab1, H2-Q4, H2-Q6 |
| Regulation of response to external stimulus | 7.40E-05 | 28 | Apod, Calcrl, Ccr2, Cd36, Cd74, Cfh, Ctss, Cxcl12, Cxcl2, Dapk2, Ets1, Gbp4, Il16, Mpp1, Nrxn1, Pf4, Ppbp, Rac2, Rora, Snca, Tbr1, Tgfbr2, Thbs4, Tlr4, Tnf, Tnr, Tspan8, Zfp36 |
| Antigen processing and presentation | 0.0001 | 10 | B2m, Cd74, Ctss, H2-Aa, H2-Ab1, H2-Q4, H2-Q6, H2-T24, Rab3c, Was |
| Intracellular region of host | 0.000213 | 5 | Gbp3, Gbp7, Gbp9, Iigp1, Pf4 |
| Regulation of leukocyte adhesion to vascular endothelial cell | 0.004 | 4 | Ccr2, Cxcl12, Ets1, Tnf |
| MHC class II protein complex | 0.007 | 3 | Cd74, H2-Aa, H2-Ab1 |
| MHC class I protein complex | 0.0091 | 3 | B2m, H2-Q4, H2-Q6 |
| Regulation of NLRP3 inflammasome complex assembly | 0.00914 | 3 | Cd36, Tlr4, Trim30a |
| Antigen processing and presentation of peptide or polysaccharide antigen via MHC class II | 0.028 | 3 | Cd74, H2-Aa, H2-Ab1 |
| Regulation of leukocyte tethering or rolling | 0.042 | 2 | Ccr2, Cxcl12 |
FDR, False discovery rate; No, Number.
Figure 4The top 40 KEGG pathway enrichments of the DEGs. The DEGs were enriched in 23 human diseases, 4 environmental information processes, 4 cellular processes, and 7 organismal systems by enrichment analysis of GO pathways. The abscissa represents the name and class of the KEGG pathway enrichment of the DEGs. The ordinate represents the enrichment of the ratio calculated by the formula of enrichment ratio = sample number/background number). ***False discovery rate (FDR) < 0.001, **FDR < 0.01, and *FDR < 0.05 from R package edge R.
Figure 5Validation of the differentially expressed genes by q-PCR. Expression levels of eight mRNAs were measured by q-PCR, named EE-qPCR and EC-qPCR. The mRNA levels were expressed as the means ± SEM of ΔCt in three biological replicates. The clean reads of each mRNA molecule from RNA-Seq were also expressed as the means ± SEM on a log10 scale, named EE-RNA-seq and EC-RNA-seq.
Figure 6Clinical signs and clinical scores in the healthy control and affected offspring after immunization with different doses of IRBP. (A) Schematic illustration of the experimental design. (B–J) Representative anterior segment pictures of the control offspring (B–D: 5, 25, and 50 μg IRBP) and the affected the F1 offspring (E–G: 5, 25, and 50 μg IRBP) and the F2 offspring (H–J: 5, 25, and 50 μg IRBP) made with a slit lamp on day 14 after immunization. Arrows show vasculitis. Triangles show posterior synechiae. (K) Clinical scores were determined using a funduscope from day 7 to 35 after immunization. Data are shown as mean ± SEM (n = 6) and are representative of two independent experiments. **P < 0.01 in Kruskal-Wallis test.
Figure 7Histological pictures in the control and affected mice on day 14 following immunization. Histological images of the control groups (A–C: immunized with 5, 25, and 50 μg IRBP, respectively) and affected F1 mice (D–F: immunized with 5, 25, and 50 μg IRBP, respectively) and F2 mice (G–I: immunized with 5, 25, and 50 μg IRBP, respectively). (J) Histological scores were assessed on sections stained with hematoxylin and eosin from the control and experimental mice. Arrows show an infiltration of inflammatory cells. The star shows a granulomatous lesion. Triangles show the retinal folding or damage. Data are shown as the mean ± SEM (n = 6) and are representative of two independent experiments. **P < 0.01 in Kruskal-Wallis test.
Figure 8Offspring gestated with EAU produced IL-17 stimulated by the systemic IRBP-specific immune response in vitro. Lymphocytes from EAU-affected mice induced with 5 μg IRBP and 25 μg IRBP were collected on day 35 post-immunization and were stimulated with or without the IRBP peptide. IL-17 production was measured with an ELISA assay. Affected offspring indicated IL-17 production. Data are the mean ± SEM and are representative of two independent experiments. *P < 0.05, **P < 0.01 in one-way ANOVA. Three mice were used in each group.
Figure 9Offspring gestated with EAU showed a systemic IRBP-specific immune response in vitro. (A) Schematic illustration of the experimental design. (B) Lymphocytes from EAU-affected mice induced with 5 μg IRBP, 25 μg IRBP, and 50 μg IRBP were collected on day 14 post-immunization and were stimulated with or without the IRBP peptide. The proliferative response was measured via the MTT assay. The affected offspring showed the IRBP-specific proliferative response. Data are expressed as mean ± SEM and are representative of two independent experiments. *P < 0.05, **P < 0.01 in one-way ANOVA. Three mice were used in each group.