| Literature DB >> 32609519 |
Michele Cutini1, Lorenzo Maschio1, Piero Ugliengo1.
Abstract
In this work, we have computed the exfoliation energy (the energy required to separate a single layer from the bulk structure), the interlayer distance, and the thermodynamic state functions for representative layered inorganic minerals such as Brucite, Portlandite, and Kaolinite, while leaving the more classical 2D transition-metal dichalcogenides (like MoS2) for future work. Such materials are interesting for several applications in the field of adsorption and in prebiotic chemistry. Their peculiar features are directly controlled by the exfoliation energy. In materials without cations/anions linking different layers, the interactions keeping the layers together are of weak nature, mainly dispersion London interactions and hydrogen bonds, somehow challenging to deal with computationally. We used Hartree-Fock (HF) and density functional theory (DFT) approaches focusing on the role of dispersion forces using the popular and widespread Grimme's pairwise dispersion schemes (-D2 and -D3) and, as a reference method, the periodic MP2 approach based on localized orbitals (LMP2). The results are highly dependent on the choice of the scheme adopted to account for dispersion interactions. D2 and D3 schemes combined with either HF or DFT lead to overestimated exfoliation energies (about 2.5 and 1.7 times higher than LMP2 data for Brucite/Portlandite and Kaolinite) and underestimated interlayer distances (by about 3.5% for Brucite/Portlandite). The reason is that D2 and D3 corrections are based on neutral atomic parameters for each chemical element which, instead, behave as cations in the considered layered material (Mg, Ca, and Al), causing overattractive interaction between layers. More sophisticated dispersion corrections methods, like those based on nonlocal vdW functionals, many body dispersion model, and exchange-hole dipole moment not relying on atom-typing, are, in principle, better suited to describe the London interaction of ionic species. Nonetheless, we demonstrate that good results can be achieved also within the simpler D2 and D3 schemes, in agreement with previous literature suggestions, by adopting the dispersion coefficients of the preceding noble gas for the ionic species, leading to energetics in good agreement with LMP2 and structures closer to the experiments.Entities:
Year: 2020 PMID: 32609519 PMCID: PMC8009511 DOI: 10.1021/acs.jctc.0c00149
Source DB: PubMed Journal: J Chem Theory Comput ISSN: 1549-9618 Impact factor: 6.006
C6 Coefficient (J·nm6·mol–1) and Atomic Radii (Å) for Alkaline Element Used in the Definition of the D* Dispersion Schemea
| Mg | Ca | |||
|---|---|---|---|---|
| scheme | C6 coefficient | atomic radii | C6 coefficient | atomic radii |
| D*[ | 5.710 | 1.432 | 10.80 | 1.548 |
| D*0 | 0 | 0 | 0 | 0 |
| D*N | 0.630 | 1.305 | 4.610 | 1.675 |
| D*I | 9.383 | 1.432 | 33.54 | 1.548 |
| D*A | 38.08 | 1.432 | 135.1 | 1.548 |
Revised D2 scheme for B3LYP, see ref (20).
Figure 1A: Brucite and Portlandite bulk structure. View along the crystallographic b axis. B: Kaolinite bulk structure. View along the crystallographic b axis. H1 (OH inner group) and H2, H3, and H4 (OH surface groups). Hydrogen bonds are reported as dotted lines. C: The octahedral coordination around Mg/Ca ions in Brucite and Portlandite from different points of view.
Predicted Interlayer Distance, c (Å), with Percentage Deviation vs Experiments (%) for Brucite and Portlandite
| method | % | % | ||
|---|---|---|---|---|
| HF-3c | 4.670 | –1.2 | 4.436 | –9.1 |
| HF-3c-027 | 4.873 | +3.1 | 4.681 | –4.1 |
| HFsol-3c | 4.894 | +3.5 | 4.792 | –1.8 |
| B3LYP7 | 4.927 | +4.2 | 5.109 | +4.7 |
| B3LYP-D*7 | 4.658 | –1.5 | 4.846 | –0.7 |
| B3LYP-D3ABC | 4.576 | –3.2 | 4.696 | –3.8 |
| B3LYP-D*0 | 4.934 | +4.4 | 5.076 | +4.0 |
| B3LYP-D*N | 4.837 | +2.3 | 4.936 | +1.1 |
| B3LYP-D*A | 4.424 | –6.4 | 4.478 | –8.2 |
| B3LYP-D*I | 4.604 | –2.6 | 4.696 | –3.8 |
| exp[ | 4.727 | 4.880 |
CP-Corrected Exfoliation Energy, ΔERIGID (kJ·mol–1), for Brucite and Portlandite
| method | Mg(OH)2 | Ca(OH)2 |
|---|---|---|
| HF-3c | –29.6 | –40.5 |
| HF-3c(0)//HF-3c | –2.2 | +0.3 |
| HF-3c(N)//HF-3c | –8.0 | –14.3 |
| HF-3c-027 | –19.1 | –23.6 |
| HFsol-3c | –17.4 | –17.8 |
| B3LYP7 | –3.8 | –4.6 |
| B3LYP-D3(0)//B3LYP-D3ABC | –9.9 | –8.5 |
| B3LYP-D3(N)//B3LYP-D3ABC | –14.0 | –18.7 |
| B3LYP-D3ABC | –34.4 | –40.6 |
| B3LYP-D*7 | –22.0 | –22.6 |
| B3LYP-D*0 | –9.8 | –10.1 |
| B3LYP-D*N | –13.1 | –17.1 |
| B3LYP-D*I | –26.3 | –37.8 |
| B3LYP-D*A | –58.4 | –104.8 |
| SP-B3LYP-D*N | –12.3 | –16.3 |
| SP-B3LYP-D3ABC | –31.7 | –41.4 |
| LMP2//B3LYP-D*N | –14.0 | –15.3 |
Experimental vs Optimized c Cell Parameter, Cell Volume, and O–O Distances for the Kaolinite Crystala
| exp[ | B3LYP7 | B3LYP-D*7 | B3LYP-D3ABC | B3LYP-D*N | HF-3c | HF-3c-027 | HFsol-3c | |
|---|---|---|---|---|---|---|---|---|
| 7.39 | 7.48 | 7.38 | 7.32 | 7.41 | 7.13 | 7.20 | 7.17 | |
| 164.3 | 170.7 | 164.9 | 161.8 | 166.8 | 150.7 | 154.1 | 153.7 | |
| O2–O2′ | 3.088 | 3.126 | 2.945 | 2.896 | 3.006 | 2.926 | 3.011 | 2.974 |
| O3–O3′ | 2.989 | 3.025 | 2.914 | 2.867 | 2.949 | 2.840 | 2.903 | 2.898 |
| O4–O4′ | 2.953 | 2.971 | 2.882 | 2.835 | 2.906 | 2.815 | 2.868 | 2.872 |
Cell parameter, c, and O–O distance in Å, volume, V, in Å3. Labeling after Figure B. Extended geometrical information reported in Table S9 of the SI.
CP-Corrected Exfoliation Energy (ΔERELAX) for Kaolinite (in kJ·mol–1)
| method | Δ |
|---|---|
| HF-3c | –107.8 |
| HF-3c-027 | –90.8 |
| HFsol-3c | –88.8 |
| B3LYP7 | –32.3 |
| B3LYP-D*7 | –71.6 |
| B3LYP-D*N | –59.2 |
| B3LYP-D3ABC | –78.8 |
| SP-B3LYP-D* | –77.6 |
| SP-B3LYP-D*N | –62.3 |
| SP-B3LYP-D3ABC | –87.9 |
| LMP2//B3LYP-D*N | –45.7 |
Exfoliation Enthalpy (ΔH) and Free Energy of Exfoliation (ΔG) at T = 298.15 K and P = 1 atma
| HF-3c | HF-3c-027 | SP-B3LYP-D*N | B3LYP-D3ABC | B3LYP-D*N | ||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Δ | Δ | Δ | Δ | Δ | Δ | Δ | Δ | Δ | Δ | |
| Mg(OH)2 | –26.8 | –26.2 | –17.5 | –17.1 | –11.5 | –11.1 | –31.3 | –29.8 | –11.2 | –10.4 |
| Ca(OH)2 | –37.4 | –37.2 | –22.0 | –21.9 | –14.0 | –13.9 | –38.4 | –37.3 | –15.6 | –14.9 |
| Al2Si2O5(OH)4 | –105.7 | –104.1 | –88.7 | –85.8 | –60.2 | –57.4 | –77.8 | –76.9 | –58.7 | –57.9 |
Data in kJ·mol–1.