Anastasiia Kim1, James H Degnan1. 1. Department of Mathematics and Statistics, University of New Mexico, Albuquerque, NM 87106, USA.
Abstract
SUMMARY: PRANC computes the Probabilities of RANked gene tree topologies under the multispecies coalescent. A ranked gene tree is a gene tree accounting for the temporal ordering of internal nodes. PRANC can also estimate the maximum likelihood (ML) species tree from a sample of ranked or unranked gene tree topologies. It estimates the ML tree with estimated branch lengths in coalescent units. AVAILABILITY AND IMPLEMENTATION: PRANC is written in C++ and freely available at github.com/anastasiiakim/PRANC. SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online.
SUMMARY: PRANC computes the Probabilities of RANked gene tree topologies under the multispecies coalescent. A ranked gene tree is a gene tree accounting for the temporal ordering of internal nodes. PRANC can also estimate the maximum likelihood (ML) species tree from a sample of ranked or unranked gene tree topologies. It estimates the ML tree with estimated branch lengths in coalescent units. AVAILABILITY AND IMPLEMENTATION: PRANC is written in C++ and freely available at github.com/anastasiiakim/PRANC. SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online.
Authors: Fredrik Ronquist; Maxim Teslenko; Paul van der Mark; Daniel L Ayres; Aaron Darling; Sebastian Höhna; Bret Larget; Liang Liu; Marc A Suchard; John P Huelsenbeck Journal: Syst Biol Date: 2012-02-22 Impact factor: 15.683