Literature DB >> 32603877

Cryo-electron microscopy analysis of small membrane proteins.

Rie Nygaard1, Jonathan Kim1, Filippo Mancia2.   

Abstract

Recent advances in single-particle cryogenic-electron microscopy have facilitated an exponential growth in the number of membrane protein structures determined to close to atomic resolution. Nevertheless, despite improvements in microscope hardware, cryo-EM software and sample preparation techniques, challenges remain for structural analysis of small-sized membrane proteins (i.e.<150 kilodalton). Here we discuss recent examples of structures of macromolecules from this category determined by cryo-EM. We analyze the underlying difficulties, the enabling technologies such as the use of antibody fragments to gain size and provide fiducials for particle alignment, and the unresolved issues like dislocation of complexes at the air-water interface. Finally, we briefly highlight the biological relevance of some of these success stories, and our predictions for the future.
Copyright © 2020 Elsevier Ltd. All rights reserved.

Entities:  

Year:  2020        PMID: 32603877      PMCID: PMC7665978          DOI: 10.1016/j.sbi.2020.05.009

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  12 in total

1.  Development of a universal nanobody-binding Fab module for fiducial-assisted cryo-EM studies of membrane proteins.

Authors:  Joël S Bloch; Somnath Mukherjee; Julia Kowal; Ekaterina V Filippova; Martina Niederer; Els Pardon; Jan Steyaert; Anthony A Kossiakoff; Kaspar P Locher
Journal:  Proc Natl Acad Sci U S A       Date:  2021-11-23       Impact factor: 11.205

2.  Structural basis of lipopolysaccharide maturation by the O-antigen ligase.

Authors:  Owen N Vickery; Satchal K Erramilli; Carmen M Herrera; Thomas H McConville; Khuram U Ashraf; Rie Nygaard; Vasileios I Petrou; Sabrina I Giacometti; Meagan Belcher Dufrisne; Kamil Nosol; Allen P Zinkle; Chris L B Graham; Michael Loukeris; Brian Kloss; Karolina Skorupinska-Tudek; Ewa Swiezewska; David I Roper; Oliver B Clarke; Anne-Catrin Uhlemann; Anthony A Kossiakoff; M Stephen Trent; Phillip J Stansfeld; Filippo Mancia
Journal:  Nature       Date:  2022-04-06       Impact factor: 69.504

3.  A 10-year meta-analysis of membrane protein structural biology: Detergents, membrane mimetics, and structure determination techniques.

Authors:  Brendon C Choy; Rosemary J Cater; Filippo Mancia; Edward E Pryor
Journal:  Biochim Biophys Acta Biomembr       Date:  2020-12-17       Impact factor: 3.747

4.  N-terminal Transmembrane-Helix Epitope Tag for X-ray Crystallography and Electron Microscopy of Small Membrane Proteins.

Authors:  Benjamin C McIlwain; Amanda L Erwin; Alexander R Davis; B Ben Koff; Louise Chang; Tatsiana Bylund; Gwo-Yu Chuang; Peter D Kwong; Melanie D Ohi; Yen-Ting Lai; Randy B Stockbridge
Journal:  J Mol Biol       Date:  2021-03-05       Impact factor: 6.151

Review 5.  Developing Graphene Grids for Cryoelectron Microscopy.

Authors:  Hongcheng Fan; Fei Sun
Journal:  Front Mol Biosci       Date:  2022-07-13

Review 6.  Targeting VIP and PACAP Receptor Signaling: New Insights into Designing Drugs for the PACAP Subfamily of Receptors.

Authors:  Jessica Lu; Sarah J Piper; Peishen Zhao; Laurence J Miller; Denise Wootten; Patrick M Sexton
Journal:  Int J Mol Sci       Date:  2022-07-22       Impact factor: 6.208

7.  Structural basis of omega-3 fatty acid transport across the blood-brain barrier.

Authors:  Rosemary J Cater; Geok Lin Chua; Satchal K Erramilli; James E Keener; Brendon C Choy; Piotr Tokarz; Cheen Fei Chin; Debra Q Y Quek; Brian Kloss; Joseph G Pepe; Giacomo Parisi; Bernice H Wong; Oliver B Clarke; Michael T Marty; Anthony A Kossiakoff; George Khelashvili; David L Silver; Filippo Mancia
Journal:  Nature       Date:  2021-06-16       Impact factor: 49.962

8.  Cryo-EM structure of a proton-activated chloride channel TMEM206.

Authors:  Zengqin Deng; Yonghui Zhao; Jing Feng; Jingying Zhang; Haiyan Zhao; Michael J Rau; James A J Fitzpatrick; Hongzhen Hu; Peng Yuan
Journal:  Sci Adv       Date:  2021-02-24       Impact factor: 14.957

Review 9.  Multitasking Na+/Taurocholate Cotransporting Polypeptide (NTCP) as a Drug Target for HBV Infection: From Protein Engineering to Drug Discovery.

Authors:  Dariusz Zakrzewicz; Joachim Geyer
Journal:  Biomedicines       Date:  2022-01-17

10.  A Fast Image Alignment Approach for 2D Classification of Cryo-EM Images Using Spectral Clustering.

Authors:  Xiangwen Wang; Yonggang Lu; Jiaxuan Liu
Journal:  Curr Issues Mol Biol       Date:  2021-10-18       Impact factor: 2.976

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