Literature DB >> 32602703

Ultrasensitive Detection of Attomolar Protein Concentrations by Dropcast Single Molecule Assays.

Connie Wu1,2, Padric M Garden1,2, David R Walt1,2.   

Abstract

Measurements of very low levels of biomolecules, including proteins and nucleic acids, remain a critical challenge in many clinical diagnostic applications due to insufficient sensitivity. While digital measurement methods such as Single Molecule Arrays (Simoa), or digital ELISA, have made significant advances in sensitivity, there are still many potential disease biomarkers that exist in accessible biofluids at levels below the detection limits of these techniques. To overcome this barrier, we have developed a simple strategy for single molecule counting, dropcast single molecule assays (dSimoa), that enables more target molecules to be counted through increased sampling efficiency and with a simpler workflow. In this approach, beads are simply dropcast onto a microscope slide and dried into a monolayer film for digital signal readout. The dSimoa platform achieves attomolar limits of detection, with an up to 25-fold improvement in sensitivity over Simoa, the current state of the art for ultrasensitive protein detection. Furthermore, due to its simple readout process and improved cost-effectiveness compared to existing digital bioassays, dSimoa increases amenability to integration into point-of-care platforms. As an illustration of the potential utility of dSimoa, we demonstrate its ability to measure previously undetectable levels of Brachyury, a tissue biomarker for chordoma, in plasma samples. With its significantly enhanced sensitivity and simplicity, dSimoa can pave the way toward the discovery of new biomarkers for early disease diagnosis and improved health outcomes.

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Year:  2020        PMID: 32602703      PMCID: PMC7368998          DOI: 10.1021/jacs.0c04331

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  42 in total

Review 1.  Chordoma: current concepts, management, and future directions.

Authors:  Brian P Walcott; Brian V Nahed; Ahmed Mohyeldin; Jean-Valery Coumans; Kristopher T Kahle; Manuel J Ferreira
Journal:  Lancet Oncol       Date:  2012-02       Impact factor: 41.316

2.  Digital readout of target binding with attomole detection limits via enzyme amplification in femtoliter arrays.

Authors:  David M Rissin; David R Walt
Journal:  J Am Chem Soc       Date:  2006-05-17       Impact factor: 15.419

3.  Highly Stable and Sensitive Nucleic Acid Amplification and Cell-Phone-Based Readout.

Authors:  Janay E Kong; Qingshan Wei; Derek Tseng; Jingzi Zhang; Eric Pan; Michael Lewinski; Omai B Garner; Aydogan Ozcan; Dino Di Carlo
Journal:  ACS Nano       Date:  2017-03-02       Impact factor: 15.881

4.  Single-Step Imprinting of Femtoliter Microwell Arrays Allows Digital Bioassays with Attomolar Limit of Detection.

Authors:  Deborah Decrop; Gaspard Pardon; Luigi Brancato; Dries Kil; Reza Zandi Shafagh; Tadej Kokalj; Tommy Haraldsson; Robert Puers; Wouter van der Wijngaart; Jeroen Lammertyn
Journal:  ACS Appl Mater Interfaces       Date:  2017-03-15       Impact factor: 9.229

5.  Highly Sensitive and Multiplexed Protein Measurements.

Authors:  Limor Cohen; David R Walt
Journal:  Chem Rev       Date:  2018-08-28       Impact factor: 60.622

6.  Mobile imaging platform for digital influenza virus counting.

Authors:  Yoshihiro Minagawa; Hiroshi Ueno; Kazuhito V Tabata; Hiroyuki Noji
Journal:  Lab Chip       Date:  2019-07-17       Impact factor: 6.799

7.  T (brachyury) gene duplication confers major susceptibility to familial chordoma.

Authors:  Xiaohong R Yang; David Ng; David A Alcorta; Norbert J Liebsch; Eamonn Sheridan; Sufeng Li; Alisa M Goldstein; Dilys M Parry; Michael J Kelley
Journal:  Nat Genet       Date:  2009-10-04       Impact factor: 38.330

8.  Digital direct detection of microRNAs using single molecule arrays.

Authors:  Limor Cohen; Mark R Hartman; Aaron Amardey-Wellington; David R Walt
Journal:  Nucleic Acids Res       Date:  2017-08-21       Impact factor: 16.971

9.  Sensitive and inexpensive digital DNA analysis by microfluidic enrichment of rolling circle amplified single-molecules.

Authors:  Malte Kühnemund; Iván Hernández-Neuta; Mohd Istiaq Sharif; Matteo Cornaglia; Martin A M Gijs; Mats Nilsson
Journal:  Nucleic Acids Res       Date:  2017-05-05       Impact factor: 16.971

10.  Targeted DNA sequencing and in situ mutation analysis using mobile phone microscopy.

Authors:  Malte Kühnemund; Qingshan Wei; Evangelia Darai; Yingjie Wang; Iván Hernández-Neuta; Zhao Yang; Derek Tseng; Annika Ahlford; Lucy Mathot; Tobias Sjöblom; Aydogan Ozcan; Mats Nilsson
Journal:  Nat Commun       Date:  2017-01-17       Impact factor: 14.919

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  11 in total

1.  Direct single-molecule imaging for diagnostic and blood screening assays.

Authors:  Qiaoqiao Ruan; Patrick J Macdonald; Kerry M Swift; Sergey Y Tetin
Journal:  Proc Natl Acad Sci U S A       Date:  2021-04-06       Impact factor: 11.205

2.  High-Throughput, High-Multiplex Digital Protein Detection with Attomolar Sensitivity.

Authors:  Connie Wu; Tyler J Dougan; David R Walt
Journal:  ACS Nano       Date:  2022-01-14       Impact factor: 18.027

Review 3.  The emerging landscape of single-molecule protein sequencing technologies.

Authors:  Javier Antonio Alfaro; Peggy Bohländer; Mingjie Dai; Mike Filius; Cecil J Howard; Xander F van Kooten; Shilo Ohayon; Adam Pomorski; Sonja Schmid; Amit Meller; Chirlmin Joo; Aleksei Aksimentiev; Eric V Anslyn; Georges Bedran; Chan Cao; Mauro Chinappi; Etienne Coyaud; Cees Dekker; Gunnar Dittmar; Nicholas Drachman; Rienk Eelkema; David Goodlett; Sébastien Hentz; Umesh Kalathiya; Neil L Kelleher; Ryan T Kelly; Zvi Kelman; Sung Hyun Kim; Bernhard Kuster; David Rodriguez-Larrea; Stuart Lindsay; Giovanni Maglia; Edward M Marcotte; John P Marino; Christophe Masselon; Michael Mayer; Patroklos Samaras; Kumar Sarthak; Lusia Sepiashvili; Derek Stein; Meni Wanunu; Mathias Wilhelm; Peng Yin
Journal:  Nat Methods       Date:  2021-06-07       Impact factor: 47.990

4.  Photooxidation-induced fluorescence amplification system for an ultra-sensitive enzyme-linked immunosorbent assay (ELISA).

Authors:  Youhee Heo; Kwanwoo Shin; Min Cheol Park; Ji Yoon Kang
Journal:  Sci Rep       Date:  2021-03-12       Impact factor: 4.379

5.  Framework for rapid comparison of extracellular vesicle isolation methods.

Authors:  Dmitry Ter-Ovanesyan; Maia Norman; Roey Lazarovits; Wendy Trieu; Ju-Hyun Lee; George M Church; David R Walt
Journal:  Elife       Date:  2021-11-16       Impact factor: 8.140

6.  The Human Proteoform Project: Defining the human proteome.

Authors:  Lloyd M Smith; Jeffrey N Agar; Julia Chamot-Rooke; Paul O Danis; Ying Ge; Joseph A Loo; Ljiljana Paša-Tolić; Yury O Tsybin; Neil L Kelleher
Journal:  Sci Adv       Date:  2021-11-12       Impact factor: 14.136

7.  All on size-coded single bead set: a modular enrich-amplify-amplify strategy for attomolar level multi-immunoassay.

Authors:  Desheng Chen; Xiaobo Zhang; Liping Zhu; Chenghui Liu; Zhengping Li
Journal:  Chem Sci       Date:  2022-02-17       Impact factor: 9.825

Review 8.  Emerging biosensing and transducing techniques for potential applications in point-of-care diagnostics.

Authors:  Junjie Qin; Wei Wang; Liqian Gao; Shao Q Yao
Journal:  Chem Sci       Date:  2022-01-11       Impact factor: 9.825

9.  Digital plasmonic nanobubble detection for rapid and ultrasensitive virus diagnostics.

Authors:  Yaning Liu; Haihang Ye; HoangDinh Huynh; Chen Xie; Peiyuan Kang; Jeffrey S Kahn; Zhenpeng Qin
Journal:  Nat Commun       Date:  2022-03-30       Impact factor: 14.919

Review 10.  Pushing the detection limits: strategies towards highly sensitive optical-based protein detection.

Authors:  Nikan Momenbeitollahi; Teran Cloet; Huiyan Li
Journal:  Anal Bioanal Chem       Date:  2021-08-06       Impact factor: 4.142

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