Literature DB >> 32599506

Computational structure modeling for diverse categories of macromolecular interactions.

Tunde Aderinwale1, Charles W Christoffer1, Daipayan Sarkar2, Eman Alnabati1, Daisuke Kihara3.   

Abstract

Computational protein-protein docking is one of the most intensively studied topics in structural bioinformatics. The field has made substantial progress through over three decades of development. The development began with methods for rigid-body docking of two proteins, which have now been extended in different directions to cover the various macromolecular interactions observed in a cell. Here, we overview the recent developments of the variations of docking methods, including multiple protein docking, peptide-protein docking, and disordered protein docking methods.
Copyright © 2020 Elsevier Ltd. All rights reserved.

Entities:  

Year:  2020        PMID: 32599506      PMCID: PMC7665979          DOI: 10.1016/j.sbi.2020.05.017

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  7 in total

1.  LZerD webserver for pairwise and multiple protein-protein docking.

Authors:  Charles Christoffer; Siyang Chen; Vijay Bharadwaj; Tunde Aderinwale; Vidhur Kumar; Matin Hormati; Daisuke Kihara
Journal:  Nucleic Acids Res       Date:  2021-07-02       Impact factor: 16.971

Review 2.  LZerD Protein-Protein Docking Webserver Enhanced With de novo Structure Prediction.

Authors:  Charles Christoffer; Vijay Bharadwaj; Ryan Luu; Daisuke Kihara
Journal:  Front Mol Biosci       Date:  2021-08-12

3.  Benchmarking of structure refinement methods for protein complex models.

Authors:  Jacob Verburgt; Daisuke Kihara
Journal:  Proteins       Date:  2021-08-03

Review 4.  TGA transcription factors-Structural characteristics as basis for functional variability.

Authors:  Špela Tomaž; Kristina Gruden; Anna Coll
Journal:  Front Plant Sci       Date:  2022-07-26       Impact factor: 6.627

5.  Protein Docking Model Evaluation by Graph Neural Networks.

Authors:  Xiao Wang; Sean T Flannery; Daisuke Kihara
Journal:  Front Mol Biosci       Date:  2021-05-25

6.  BITS2019: the sixteenth annual meeting of the Italian society of bioinformatics.

Authors:  Alfonso Urso; Antonino Fiannaca; Massimo La Rosa; Laura La Paglia; Giosue' Lo Bosco; Riccardo Rizzo
Journal:  BMC Bioinformatics       Date:  2020-09-16       Impact factor: 3.169

Review 7.  Computational Modeling as a Tool to Investigate PPI: From Drug Design to Tissue Engineering.

Authors:  Juan J Perez; Roman A Perez; Alberto Perez
Journal:  Front Mol Biosci       Date:  2021-05-20
  7 in total

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