Literature DB >> 32593837

Abundance of kinless hubs within soil microbial networks are associated with high functional potential in agricultural ecosystems.

Yu Shi1, Manuel Delgado-Baquerizo2, Yuntao Li1, Yunfeng Yang3, Yong-Guan Zhu4, Josep Peñuelas5, Haiyan Chu6.   

Abstract

Microbial taxa within complex ecological networks can be classified by their universal roles based on their level of connectivity with other taxa. Highly connected taxa within an ecological network (kinless hubs) are theoretically expected to support higher levels of ecosystem functions than less connected taxa (peripherals). Empirical evidence of the role of kinless hubs in regulating the functional potential of soil microbial communities, however, is largely unexplored and poorly understood in agricultural ecosystems. Here, we built a correlation network of fungal and bacterial taxa using a large-scale survey consisting of 243 soil samples across functionally and economically important agricultural ecosystems (wheat and maize); and found that the relative abundance of taxa classified as kinless hubs within the ecological network are positively and significantly correlated with the abundance of functional genes including genes for C fixation, C degradation, C methanol, N cycling, P cycling and S cycling. Structural equation modeling of multiple soil properties further indicated that kinless hubs, but not provincial, connector or peripheral taxa, had direct significant and positive relationships with the abundance of multiple functional genes. Our findings provide novel evidence that the relative abundance of soil taxa classified as kinless hubs within microbial networks are associated with high functional potential, with implications for understanding and managing (through manipulating microbial key species) agricultural ecosystems at a large spatial scale.
Copyright © 2020 The Author(s). Published by Elsevier Ltd.. All rights reserved.

Entities:  

Keywords:  Bacteria; Functional gene; Fungi; Kinless hub; Microbial network

Year:  2020        PMID: 32593837     DOI: 10.1016/j.envint.2020.105869

Source DB:  PubMed          Journal:  Environ Int        ISSN: 0160-4120            Impact factor:   9.621


  17 in total

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4.  Nutrient Exposure Alters Microbial Composition, Structure, and Mercury Methylating Activity in Periphyton in a Contaminated Watershed.

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Journal:  Front Microbiol       Date:  2021-03-19       Impact factor: 5.640

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6.  Soil Bacterial Community in the Multiple Cropping System Increased Grain Yield Within 40 Cultivation Years.

Authors:  Tao Chen; Ruiwen Hu; Zhongyi Zheng; Jiayi Yang; Huan Fan; Xiaoqiang Deng; Wang Yao; Qiming Wang; Shuguang Peng; Juan Li
Journal:  Front Plant Sci       Date:  2021-12-20       Impact factor: 5.753

7.  Network mapping of root-microbe interactions in Arabidopsis thaliana.

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8.  Distinct Co-occurrence Relationships and Assembly Processes of Active Methane-Oxidizing Bacterial Communities Between Paddy and Natural Wetlands of Northeast China.

Authors:  Xu Liu; Yu Shi; Teng Yang; Gui-Feng Gao; Liyan Zhang; Ruoyu Xu; Chenxin Li; Ruiyang Liu; Junjie Liu; Haiyan Chu
Journal:  Front Microbiol       Date:  2022-01-26       Impact factor: 5.640

9.  Foliar Herbivory Reduces Rhizosphere Fungal Diversity and Destabilizes the Co-occurrence Network.

Authors:  Yu Shi; Kaoping Zhang; Tiantian Ma; Zhongyue Zhang; Ping Li; Zhenlong Xing; Jianqing Ding
Journal:  Front Microbiol       Date:  2022-03-08       Impact factor: 5.640

10.  Biological invasions alter environmental microbiomes: A meta-analysis.

Authors:  Antonino Malacrinò; Victoria A Sadowski; Tvisha K Martin; Nathalia Cavichiolli de Oliveira; Ian J Brackett; James D Feller; Kristian J Harris; Orlando Combita Heredia; Rosa Vescio; Alison E Bennett
Journal:  PLoS One       Date:  2020-10-22       Impact factor: 3.240

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