Literature DB >> 32587022

Arctic-adapted dogs emerged at the Pleistocene-Holocene transition.

Mikkel-Holger S Sinding1,2,3,4,5, Shyam Gopalakrishnan6, Jazmín Ramos-Madrigal6, Marc de Manuel7, Vladimir V Pitulko8, Lukas Kuderna7, Tatiana R Feuerborn6,3,9,10, Laurent A F Frantz11,12, Filipe G Vieira6, Jonas Niemann6,13, Jose A Samaniego Castruita6, Christian Carøe6, Emilie U Andersen-Ranberg3,14, Peter D Jordan15, Elena Y Pavlova16, Pavel A Nikolskiy17, Aleksei K Kasparov8, Varvara V Ivanova18, Eske Willerslev6,19,20,21, Pontus Skoglund22,23, Merete Fredholm24, Sanne Eline Wennerberg25, Mads Peter Heide-Jørgensen4, Rune Dietz26, Christian Sonne3,26,27, Morten Meldgaard6,3, Love Dalén9,28, Greger Larson11, Bent Petersen6,29, Thomas Sicheritz-Pontén6,29, Lutz Bachmann2, Øystein Wiig2, Tomas Marques-Bonet30,31,32,33, Anders J Hansen1,3, M Thomas P Gilbert1,34.   

Abstract

Although sled dogs are one of the most specialized groups of dogs, their origin and evolution has received much less attention than many other dog groups. We applied a genomic approach to investigate their spatiotemporal emergence by sequencing the genomes of 10 modern Greenland sled dogs, an ~9500-year-old Siberian dog associated with archaeological evidence for sled technology, and an ~33,000-year-old Siberian wolf. We found noteworthy genetic similarity between the ancient dog and modern sled dogs. We detected gene flow from Pleistocene Siberian wolves, but not modern American wolves, to present-day sled dogs. The results indicate that the major ancestry of modern sled dogs traces back to Siberia, where sled dog-specific haplotypes of genes that potentially relate to Arctic adaptation were established by 9500 years ago.
Copyright © 2020 The Authors, some rights reserved; exclusive licensee American Association for the Advancement of Science. No claim to original U.S. Government Works.

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Year:  2020        PMID: 32587022      PMCID: PMC7116267          DOI: 10.1126/science.aaz8599

Source DB:  PubMed          Journal:  Science        ISSN: 0036-8075            Impact factor:   47.728


  60 in total

1.  The Genome Analysis Toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data.

Authors:  Aaron McKenna; Matthew Hanna; Eric Banks; Andrey Sivachenko; Kristian Cibulskis; Andrew Kernytsky; Kiran Garimella; David Altshuler; Stacey Gabriel; Mark Daly; Mark A DePristo
Journal:  Genome Res       Date:  2010-07-19       Impact factor: 9.043

2.  Estimating individual admixture proportions from next generation sequencing data.

Authors:  Line Skotte; Thorfinn Sand Korneliussen; Anders Albrechtsen
Journal:  Genetics       Date:  2013-09-11       Impact factor: 4.562

3.  Sequencing of 50 human exomes reveals adaptation to high altitude.

Authors:  Xin Yi; Yu Liang; Emilia Huerta-Sanchez; Xin Jin; Zha Xi Ping Cuo; John E Pool; Xun Xu; Hui Jiang; Nicolas Vinckenbosch; Thorfinn Sand Korneliussen; Hancheng Zheng; Tao Liu; Weiming He; Kui Li; Ruibang Luo; Xifang Nie; Honglong Wu; Meiru Zhao; Hongzhi Cao; Jing Zou; Ying Shan; Shuzheng Li; Qi Yang; Peixiang Ni; Geng Tian; Junming Xu; Xiao Liu; Tao Jiang; Renhua Wu; Guangyu Zhou; Meifang Tang; Junjie Qin; Tong Wang; Shuijian Feng; Guohong Li; Jiangbai Luosang; Wei Wang; Fang Chen; Yading Wang; Xiaoguang Zheng; Zhuo Li; Zhuoma Bianba; Ge Yang; Xinping Wang; Shuhui Tang; Guoyi Gao; Yong Chen; Zhen Luo; Lamu Gusang; Zheng Cao; Qinghui Zhang; Weihan Ouyang; Xiaoli Ren; Huiqing Liang; Huisong Zheng; Yebo Huang; Jingxiang Li; Lars Bolund; Karsten Kristiansen; Yingrui Li; Yong Zhang; Xiuqing Zhang; Ruiqiang Li; Songgang Li; Huanming Yang; Rasmus Nielsen; Jun Wang; Jian Wang
Journal:  Science       Date:  2010-07-02       Impact factor: 47.728

4.  The evolutionary history of dogs in the Americas.

Authors:  Máire Ní Leathlobhair; Angela R Perri; Evan K Irving-Pease; Kelsey E Witt; Anna Linderholm; James Haile; Ophelie Lebrasseur; Carly Ameen; Jeffrey Blick; Adam R Boyko; Selina Brace; Yahaira Nunes Cortes; Susan J Crockford; Alison Devault; Evangelos A Dimopoulos; Morley Eldridge; Jacob Enk; Shyam Gopalakrishnan; Kevin Gori; Vaughan Grimes; Eric Guiry; Anders J Hansen; Ardern Hulme-Beaman; John Johnson; Andrew Kitchen; Aleksei K Kasparov; Young-Mi Kwon; Pavel A Nikolskiy; Carlos Peraza Lope; Aurélie Manin; Terrance Martin; Michael Meyer; Kelsey Noack Myers; Mark Omura; Jean-Marie Rouillard; Elena Y Pavlova; Paul Sciulli; Mikkel-Holger S Sinding; Andrea Strakova; Varvara V Ivanova; Christopher Widga; Eske Willerslev; Vladimir V Pitulko; Ian Barnes; M Thomas P Gilbert; Keith M Dobney; Ripan S Malhi; Elizabeth P Murchison; Greger Larson; Laurent A F Frantz
Journal:  Science       Date:  2018-07-06       Impact factor: 47.728

5.  The genomics of selection in dogs and the parallel evolution between dogs and humans.

Authors:  Guo-dong Wang; Weiwei Zhai; He-chuan Yang; Ruo-xi Fan; Xue Cao; Li Zhong; Lu Wang; Fei Liu; Hong Wu; Lu-guang Cheng; Andrei D Poyarkov; Nikolai A Poyarkov; Shu-sheng Tang; Wen-ming Zhao; Yun Gao; Xue-mei Lv; David M Irwin; Peter Savolainen; Chung-I Wu; Ya-ping Zhang
Journal:  Nat Commun       Date:  2013       Impact factor: 14.919

6.  The genomic signature of dog domestication reveals adaptation to a starch-rich diet.

Authors:  Erik Axelsson; Abhirami Ratnakumar; Maja-Louise Arendt; Khurram Maqbool; Matthew T Webster; Michele Perloski; Olof Liberg; Jon M Arnemo; Ake Hedhammar; Kerstin Lindblad-Toh
Journal:  Nature       Date:  2013-01-23       Impact factor: 49.962

7.  Joint linkage and association analysis with exome sequence data implicates SLC25A40 in hypertriglyceridemia.

Authors:  Elisabeth A Rosenthal; Jane Ranchalis; David R Crosslin; Amber Burt; John D Brunzell; Arno G Motulsky; Deborah A Nickerson; Ellen M Wijsman; Gail P Jarvik
Journal:  Am J Hum Genet       Date:  2013-11-21       Impact factor: 11.025

8.  Worldwide patterns of genomic variation and admixture in gray wolves.

Authors:  Zhenxin Fan; Pedro Silva; Ilan Gronau; Shuoguo Wang; Aitor Serres Armero; Rena M Schweizer; Oscar Ramirez; John Pollinger; Marco Galaverni; Diego Ortega Del-Vecchyo; Lianming Du; Wenping Zhang; Zhihe Zhang; Jinchuan Xing; Carles Vilà; Tomas Marques-Bonet; Raquel Godinho; Bisong Yue; Robert K Wayne
Journal:  Genome Res       Date:  2015-12-17       Impact factor: 9.043

9.  AdapterRemoval v2: rapid adapter trimming, identification, and read merging.

Authors:  Mikkel Schubert; Stinus Lindgreen; Ludovic Orlando
Journal:  BMC Res Notes       Date:  2016-02-12

10.  Whole-genome sequence analysis shows that two endemic species of North American wolf are admixtures of the coyote and gray wolf.

Authors:  Bridgett M vonHoldt; James A Cahill; Zhenxin Fan; Ilan Gronau; Jacqueline Robinson; John P Pollinger; Beth Shapiro; Jeff Wall; Robert K Wayne
Journal:  Sci Adv       Date:  2016-07-27       Impact factor: 14.136

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  12 in total

1.  Natural and human-driven selection of a single non-coding body size variant in ancient and modern canids.

Authors:  Jocelyn Plassais; Bridgett M vonHoldt; Heidi G Parker; Alberto Carmagnini; Nicolas Dubos; Ilenia Papa; Kevin Bevant; Thomas Derrien; Lauren M Hennelly; D Thad Whitaker; Alex C Harris; Andrew N Hogan; Heather J Huson; Victor F Zaibert; Anna Linderholm; James Haile; Thierry Fest; Bilal Habib; Benjamin N Sacks; Norbert Benecke; Alan K Outram; Mikhail V Sablin; Mietje Germonpré; Greger Larson; Laurent Frantz; Elaine A Ostrander
Journal:  Curr Biol       Date:  2022-01-31       Impact factor: 10.834

2.  Genetic Origins of the Two Canis lupus familiaris (Dog) Freight Dog Populations.

Authors:  Muhammad Basil Ali; Dayna L Dreger; Reuben M Buckley; Shahid Mansoor; Qaiser M Khan; Elaine A Ostrander
Journal:  J Hered       Date:  2022-05-16       Impact factor: 2.679

3.  Modern Siberian dog ancestry was shaped by several thousand years of Eurasian-wide trade and human dispersal.

Authors:  Tatiana R Feuerborn; Alberto Carmagnini; Robert J Losey; Tatiana Nomokonova; Arthur Askeyev; Igor Askeyev; Oleg Askeyev; Ekaterina E Antipina; Martin Appelt; Olga P Bachura; Fiona Beglane; Daniel G Bradley; Kevin G Daly; Shyam Gopalakrishnan; Kristian Murphy Gregersen; Chunxue Guo; Andrei V Gusev; Carleton Jones; Pavel A Kosintsev; Yaroslav V Kuzmin; Valeria Mattiangeli; Angela R Perri; Andrei V Plekhanov; Jazmín Ramos-Madrigal; Anne Lisbeth Schmidt; Dilyara Shaymuratova; Oliver Smith; Lilia V Yavorskaya; Guojie Zhang; Eske Willerslev; Morten Meldgaard; M Thomas P Gilbert; Greger Larson; Love Dalén; Anders J Hansen; Mikkel-Holger S Sinding; Laurent Frantz
Journal:  Proc Natl Acad Sci U S A       Date:  2021-09-28       Impact factor: 12.779

Review 4.  Peopling of the Americas as inferred from ancient genomics.

Authors:  Eske Willerslev; David J Meltzer
Journal:  Nature       Date:  2021-06-16       Impact factor: 49.962

5.  Dog domestication and the dual dispersal of people and dogs into the Americas.

Authors:  Angela R Perri; Tatiana R Feuerborn; Laurent A F Frantz; Greger Larson; Ripan S Malhi; David J Meltzer; Kelsey E Witt
Journal:  Proc Natl Acad Sci U S A       Date:  2021-02-09       Impact factor: 12.779

6.  QimmeqHealth-thyroid status of Greenland sled dogs (Canis lupus familiaris borealis).

Authors:  Bolette Winnerskjold Gjaldbæk; Emilie Ulrikka Andersen-Ranberg; Rikke Langebæk; Anne Kirstine Havnsøe Krogh
Journal:  Acta Vet Scand       Date:  2021-11-29       Impact factor: 1.695

7.  Genomes of Pleistocene Siberian Wolves Uncover Multiple Extinct Wolf Lineages.

Authors:  Jazmín Ramos-Madrigal; Mikkel-Holger S Sinding; Christian Carøe; Sarah S T Mak; Jonas Niemann; José A Samaniego Castruita; Sergey Fedorov; Alexander Kandyba; Mietje Germonpré; Hervé Bocherens; Tatiana R Feuerborn; Vladimir V Pitulko; Elena Y Pavlova; Pavel A Nikolskiy; Aleksei K Kasparov; Varvara V Ivanova; Greger Larson; Laurent A F Frantz; Eske Willerslev; Morten Meldgaard; Bent Petersen; Thomas Sicheritz-Ponten; Lutz Bachmann; Øystein Wiig; Anders J Hansen; M Thomas P Gilbert; Shyam Gopalakrishnan
Journal:  Curr Biol       Date:  2020-10-29       Impact factor: 10.834

8.  Dog colour patterns explained by modular promoters of ancient canid origin.

Authors:  Danika L Bannasch; Christopher B Kaelin; Gregory S Barsh; Tosso Leeb; Anna Letko; Robert Loechel; Petra Hug; Vidhya Jagannathan; Jan Henkel; Petra Roosje; Marjo K Hytönen; Hannes Lohi; Meharji Arumilli; Katie M Minor; James R Mickelson; Cord Drögemüller
Journal:  Nat Ecol Evol       Date:  2021-08-12       Impact factor: 15.460

9.  Genome-wide scan for selective footprints and genes related to cold tolerance in Chantecler chickens.

Authors:  Nai-Yi Xu; Wei Si; Ming Li; Mian Gong; Jean-Marc Larivière; Hojjat Asadollahpour Nanaei; Pei-Pei Bian; Yu Jiang; Xin Zhao
Journal:  Zool Res       Date:  2021-11-18

10.  Genome-scale sequencing and analysis of human, wolf, and bison DNA from 25,000-year-old sediment.

Authors:  Pere Gelabert; Susanna Sawyer; Anders Bergström; Ashot Margaryan; Thomas C Collin; Tengiz Meshveliani; Anna Belfer-Cohen; David Lordkipanidze; Nino Jakeli; Zinovi Matskevich; Guy Bar-Oz; Daniel M Fernandes; Olivia Cheronet; Kadir T Özdoğan; Victoria Oberreiter; Robin N M Feeney; Mareike C Stahlschmidt; Pontus Skoglund; Ron Pinhasi
Journal:  Curr Biol       Date:  2021-07-12       Impact factor: 10.834

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