| Literature DB >> 32580948 |
Fabrizio Bonelli1, Antonella Sarasini2, Claudia Zierold3, Mariella Calleri3, Alice Bonetti2,4, Chiara Vismara5, Frank A Blocki3, Luca Pallavicini3, Alberto Chinali3, Daniela Campisi5, Elena Percivalle2, Anna Pia DiNapoli2,4, Carlo Federico Perno5, Fausto Baldanti2,4.
Abstract
In the coronavirus (CoV) disease 2019 (COVID-19) pandemic, highly selective serological testing is essential to define exposure to severe acute respiratory syndrome CoV 2 (SARS-CoV-2). Many tests have been developed, yet with variable speeds to first results, and are of unknown quality, particularly when considering the prediction of neutralizing capacity. The LIAISON SARS-CoV-2 S1/S2 IgG assay was designed to measure antibodies against the SARS-CoV-2 native S1/S2 proteins in a standardized automated chemiluminescence assay. The clinical and analytical performances of the test were validated in an observational study using residual samples (>1,500) with a positive or negative COVID-19 diagnosis. The LIAISON SARS-CoV-2 S1/S2 IgG assay proved to be highly selective and specific and offered semiquantitative measures of serum or plasma levels of anti-S1/S2 IgG with neutralizing activity. The assay's diagnostic sensitivities were 91.3% and 95.7% at >5 or ≥15 days from diagnosis, respectively, and 100% when assessed against a neutralizing assay. The assay's specificity ranged between 97% and 98.5%. The average imprecision of the assay was a <5% coefficient of variation. Assay performance at 2 different cutoffs was evaluated to optimize predictive values. The automated LIAISON SARS-CoV-2 S1/S2 IgG assay brings efficient, sensitive, specific, and precise serological testing to the laboratory, with the capacity to test large amounts of samples per day; first results are available within 35 min, with a throughput of 170 tests/hour. The semiquantitative results provided by the test also associate with the presence of neutralizing antibodies and may provide a useful tool for the large-scale screening of convalescent-phase plasma for safe therapeutic use.Entities:
Keywords: CLIA; COVID-19; SARS-CoV-2; diagnostics; immunoassays; immunoserology; neutralization assay; neutralizing antibodies; spike
Mesh:
Substances:
Year: 2020 PMID: 32580948 PMCID: PMC7448652 DOI: 10.1128/JCM.01224-20
Source DB: PubMed Journal: J Clin Microbiol ISSN: 0095-1137 Impact factor: 5.948
Summary of clinical sample types assessed in this observational study
| Group | No. of clinical samples ( | Hospital stay | ICU stay | SARS-CoV-2 RT-PCR positive | NT | Serial samples |
|---|---|---|---|---|---|---|
| Paired COVID-19 | 31 | Yes | No | Yes | No | Yes, admission (1st) and discharge (2nd) |
| ICU serial | 16 | Yes | Yes | Yes | No | Yes |
| ICU | 21 | Yes | Yes | Yes | No | No |
| Outpatient positive | 37 | No | No | Yes | No | No |
| Pre-COVID-19 negative | 1,140 | No | No | Not tested | No | No |
| Infected with other CoVs | 10 | No | No | Not tested | No | No |
| COVID-19 negative | 50 | No | No | No | No | No |
| NT negative | 180 | No | No | Unknown | Negative | No |
| NT positive | 124 | Unknown | Unknown | Unknown | Positive | No |
NT, neutralization.
FIG 1Distribution of SARS-CoV-2 S1/S2 IgG levels in various patient groups. All the patient groups categorized as positive (RT-PCR positive, hospitalized, and in the ICU) are significantly different from the negative groups (RT-PCR negative, pre-COVID-19, and infected with other HCoVs) at a P of <0.0001 (***), as determined by a pairwise t test comparison with Bonferroni multiplicity adjustment. The ICU patient group is significantly different from the hospitalized patient group (###, P < 0.0001).
Longitudinal assessment of positive predictive agreement with an RT-PCR diagnosis for COVID-19 patients
| No. of days from diagnosis | No. of subjects | Cumulative no. of S1/S2 IgG+ subjects/total | PPA (95%CI) | |||||
|---|---|---|---|---|---|---|---|---|
| First serial measurement | Second serial measurement | Third serial measurement | ||||||
| Total | S1/S2 IgG+ | Total | S1/S2 IgG+ | Total | S1/S2 IgG+ | |||
| ≤5 | 84 | 28 | 28/84 | 33.3 (23.4–44.5) | ||||
| 6–14 | 7 | 7 | 71 | 62 | 1 | 1 | 70/79 | 88.6 (79.5–94.7) |
| ≥15 | 13 | 13 | 12 | 12 | 22 | 20 | 45/47 | 95.7 (85.5–99.5) |
| Total no. of subjects | 104 | 83 | 23 | |||||
Serial samples from 104 COVID-19 patients positive by RT-PCR admitted to the hospital or ICU were tested with the LIAISON SARS-CoV-2 S1/S2 IgG assay. A value of 9 AU/ml was used as the cutoff for positivity. All samples in the same time brackets across measurements are from different patients, except for 3 samples from the third serial measurement at ≥15 days.
Clinical performance of the LIAISON SARS-CoV-2 S1/S2 IgG assay using 9 and 15 AU/ml as cutoffs based on RT-PCR diagnoses
| Cutoff (AU/ml) | Sensitivity or specificity | Time period or test result | LIAISON SARS-CoV-2 S1/S2 IgG assay | ||
|---|---|---|---|---|---|
| % of positive samples | 95% CI | No. of samples | |||
| 9 | Sensitivity | ≤5 days | 33.3 | 23.4–44.5 | 84 |
| >5 days | 91.3 | 85.0–95.6 | 127 | ||
| Specificity | Pre-COVID-19 | 97.1 | 96.0–98.0 | 1,140 | |
| All negative results | 97.0 | 95.9–97.8 | 1,380 | ||
| 15 | Sensitivity | ≤5 days | 22.6 | 14.2–33.0 | 84 |
| >5 days | 88.2 | 81.3–93.2 | 127 | ||
| Specificity | Pre-COVID-19 | 98.5 | 97.6–99.1 | 1,140 | |
| All negative results | 98.1 | 97.2–98.8 | 1,380 | ||
FIG 2SARS-CoV-2 S1/S2 IgG measurements for 211 samples collected over the course of time from 84 patients at admission and variably thereafter up to 36 days. The upward trend was modeled using an exponential regression [ln(IgG) = A + B · exp(C · days)]. The parameter A (4.58) represents the upper limit to which the LIAISON SARS-CoV-2 S1/S2 IgG trends over time and corresponds to 98 AU/ml. A + B (1.63) is the value at time zero corresponding to 5.1 AU/ml on the original scale. The parameter C (−0.112) is the rate at which the curve moves up to the asymptote and corresponds to 1.1 AU/ml per day. The dotted horizontal line is 15 AU/ml, the positive cutoff the assay. The curve cuts this at 5 days, giving an estimate of the delay from diagnosis above which the patient is, on average, positive.
FIG 3Distribution of the LIAISON SARS-CoV-2 S1/S2 IgG assay measurements compared to values for neutralization-positive (titers ≥ 1:40) and -negative (titers < 1:40) samples by the NT assay. Assay performance is presented specifically for neutralization using 9 and 15 AU/ml as cutoffs.
FIG 4Relationship to and distribution of the LIAISON SARS-CoV-2 S1/S2 IgG assay levels versus NT dilutions. LIAISON SARS-CoV-2 S1/S2 IgG measurements were separated into 3 groups (<40 AU/ml, 40 to 80 AU/ml, and >80 AU/ml) and related to NT assay groups by titers: ≥1:160 (dark gray) or ≥1:80 (light gray). In the >80-AU/ml group, 33 of 38 samples have an NT assay titer of ≥1:160, while 35 of 38 samples have an NT assay titer of ≥1:80. Both titers are considered acceptable by FDA guidelines (12). The respective semiquantitative groups contain 43, 43, and 38 samples.