Literature DB >> 32578995

Position-Dependent Effect of Guanine Base Damage and Mutations on Telomeric G-Quadruplex and Telomerase Extension.

Hui-Ting Lee1, Samantha Sanford2, Tapas Paul1, Joshua Choe1, Arindam Bose2, Patricia L Opresko2, Sua Myong1,3.   

Abstract

Telomeres are hot spots for mutagenic oxidative and methylation base damage due to their high guanine content. We used single-molecule fluorescence resonance energy transfer detection and biochemical assays to determine how different positions and types of guanine damage and mutations alter telomeric G-quadruplex structure and telomerase activity. We compared 15 modifications, including 8-oxoguanine (8oxoG), O-6-methylguanine (O6mG), and all three possible point mutations (G to A, T, and C) at the 3' three terminal guanine positions of a telomeric G-quadruplex, which is the critical access point for telomerase. We found that G-quadruplex structural instability was induced in the order C < T < A ≤ 8oxoG < O6mG, with the perturbation caused by O6mG far exceeding the perturbation caused by other base alterations. For all base modifications, the central G position was the most destabilizing among the three terminal guanines. While the structural disruption by 8oxoG and O6mG led to concomitant increases in telomerase binding and extension activity, the structural perturbation by point mutations (A, T, and C) did not, due to disrupted annealing between the telomeric overhang and the telomerase RNA template. Repositioning the same mutations away from the terminal guanines caused both G-quadruplex structural instability and elevated telomerase activity. Our findings demonstrate how a single-base modification drives structural alterations and telomere lengthening in a position-dependent manner. Furthermore, our results suggest a long-term and inheritable effect of telomeric DNA damage that can lead to telomere lengthening, which potentially contributes to oncogenesis.

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Year:  2020        PMID: 32578995      PMCID: PMC8674823          DOI: 10.1021/acs.biochem.0c00434

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  70 in total

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2.  Pot1, the putative telomere end-binding protein in fission yeast and humans.

Authors:  P Baumann; T R Cech
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3.  Dynamic roles for G4 DNA in the biology of eukaryotic cells.

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Journal:  Nat Struct Mol Biol       Date:  2006-12       Impact factor: 15.369

4.  Substitution of adenine for guanine in the quadruplex-forming human telomere DNA sequence G(3)(T(2)AG(3))(3).

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Journal:  Biochimie       Date:  2008-09-25       Impact factor: 4.079

5.  G-quadruplex conformation and dynamics are determined by loop length and sequence.

Authors:  Ramreddy Tippana; Weikun Xiao; Sua Myong
Journal:  Nucleic Acids Res       Date:  2014-06-11       Impact factor: 16.971

6.  8-Hydroxyguanine (7,8-dihydro-8-oxoguanine) in hot spots of the c-Ha-ras gene: effects of sequence contexts on mutation spectra.

Authors:  H Kamiya; N Murata-Kamiya; S Koizume; H Inoue; S Nishimura; E Ohtsuka
Journal:  Carcinogenesis       Date:  1995-04       Impact factor: 4.944

7.  Hybrid-type and two-tetrad antiparallel telomere DNA G-quadruplex structures in living human cells.

Authors:  Hong-Liang Bao; Hong-Shan Liu; Yan Xu
Journal:  Nucleic Acids Res       Date:  2019-06-04       Impact factor: 16.971

8.  Impact of Oxidative Lesions on the Human Telomeric G-Quadruplex.

Authors:  Stasė Bielskutė; Janez Plavec; Peter Podbevšek
Journal:  J Am Chem Soc       Date:  2019-02-04       Impact factor: 15.419

9.  G-quadruplex formation in telomeres enhances POT1/TPP1 protection against RPA binding.

Authors:  Sujay Ray; Jigar N Bandaria; Mohammad H Qureshi; Ahmet Yildiz; Hamza Balci
Journal:  Proc Natl Acad Sci U S A       Date:  2014-02-10       Impact factor: 12.779

10.  Telomeric G-quadruplexes are a substrate and site of localization for human telomerase.

Authors:  Aaron L Moye; Karina C Porter; Scott B Cohen; Tram Phan; Katherine G Zyner; Natsuki Sasaki; George O Lovrecz; Jennifer L Beck; Tracy M Bryan
Journal:  Nat Commun       Date:  2015-07-09       Impact factor: 14.919

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  10 in total

1.  Genome-wide analysis of 8-oxo-7,8-dihydro-2'-deoxyguanosine at single-nucleotide resolution unveils reduced occurrence of oxidative damage at G-quadruplex sites.

Authors:  Jiao An; Mengdie Yin; Jiayong Yin; Sizhong Wu; Christopher P Selby; Yanyan Yang; Aziz Sancar; Guo-Liang Xu; Maoxiang Qian; Jinchuan Hu
Journal:  Nucleic Acids Res       Date:  2021-12-02       Impact factor: 16.971

2.  DNA-RNA hybrid G-quadruplex tends to form near the 3' end of telomere overhang.

Authors:  Bok-Eum Choi; Hui-Ting Lee
Journal:  Biophys J       Date:  2022-06-28       Impact factor: 3.699

Review 3.  Unraveling protein's structural dynamics: from configurational dynamics to ensemble switching guides functional mesoscale assemblies.

Authors:  Exequiel Medina; Danielle R Latham; Hugo Sanabria
Journal:  Curr Opin Struct Biol       Date:  2020-11-24       Impact factor: 6.809

4.  A Helicase Unwinds Hexanucleotide Repeat RNA G-Quadruplexes and Facilitates Repeat-Associated Non-AUG Translation.

Authors:  Honghe Liu; Yu-Ning Lu; Tapas Paul; Goran Periz; Michael T Banco; Adrian R Ferré-D'Amaré; Jeffrey D Rothstein; Lindsey R Hayes; Sua Myong; Jiou Wang
Journal:  J Am Chem Soc       Date:  2021-04-15       Impact factor: 15.419

5.  Regeneration of PEG slide for multiple rounds of single-molecule measurements.

Authors:  Tapas Paul; Taekjip Ha; Sua Myong
Journal:  Biophys J       Date:  2021-03-04       Impact factor: 4.033

6.  Oxidative lesions modulate G-quadruplex stability and structure in the human BCL2 promoter.

Authors:  Stasė Bielskutė; Janez Plavec; Peter Podbevšek
Journal:  Nucleic Acids Res       Date:  2021-02-26       Impact factor: 16.971

Review 7.  Impact of G-Quadruplexes and Chronic Inflammation on Genome Instability: Additive Effects during Carcinogenesis.

Authors:  MaryElizabeth Stein; Kristin A Eckert
Journal:  Genes (Basel)       Date:  2021-11-09       Impact factor: 4.096

8.  Protocol for generation and regeneration of PEG-passivated slides for single-molecule measurements.

Authors:  Tapas Paul; Sua Myong
Journal:  STAR Protoc       Date:  2022-02-03

9.  TRF2 promotes dynamic and stepwise looping of POT1 bound telomeric overhang.

Authors:  Tapas Paul; Wilson Liou; Xinyi Cai; Patricia L Opresko; Sua Myong
Journal:  Nucleic Acids Res       Date:  2021-12-02       Impact factor: 16.971

10.  How DNA damage and non-canonical nucleotides alter the telomerase catalytic cycle.

Authors:  Samantha L Sanford; Griffin A Welfer; Bret D Freudenthal; Patricia L Opresko
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  10 in total

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