| Literature DB >> 32577703 |
Oguzhan Alagoz1, Ajay K Sethi2, Brian W Patterson3, Matthew Churpek4, Nasia Safdar5.
Abstract
BACKGROUND: Across the U.S., various social distancing measures were implemented to control COVID-19 pandemic. However, there is uncertainty in the effectiveness of such measures for specific regions with varying population demographics and different levels of adherence to social distancing. The objective of this paper is to determine the impact of social distancing measures in unique regions.Entities:
Year: 2020 PMID: 32577703 PMCID: PMC7302402 DOI: 10.1101/2020.06.07.20124859
Source DB: PubMed Journal: medRxiv
Figure 1.Progression of COVID-19 in the individuals
List of the input parameters
| Name | Description | Notation | Mean Value | Source | |
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| Incubation period | Time between exposure until symptoms occur | μe | 5 days | CDC and literature[ | |
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| Duration of mild symptoms | Time between the beginning of the mild symptoms and beginning of the severe symptoms (or recovery) | μm | 6 days | CDC and literature[ | |
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| Duration of severe symptoms (hospitalization) | Time between the beginning of the severe symptoms and beginning of the critical symptoms (or recovery) | μs | 6 days | CDC and literature[ | |
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| Duration of critical symptoms (ICU stay) | Time between the beginning of the severe symptoms and death or recovery | μc | 10 days | CDC and literature[ | |
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| Probability of recovery after experiencing mild symptoms | Probability that an infected patient with mild symptoms (who also has tested positive) will recover once the mild symptomatic phase is over. This parameter is a function of age. |
| Age | CDC[ | |
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| 0–19 | 98% | ||||
| 20–44 | 82% | ||||
| 45–54 | 75% | ||||
| 55–64 | 75% | ||||
| 65–74 | 64% | ||||
| 75–84 | 55% | ||||
| ≥85 | 49% | ||||
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| Probability of recovery after experiencing severe symptoms | Probability that an infected patient with severe symptoms will recover once the severe symptomatic phase is over. This parameter is a function of age. |
| Age |
| CDC[ |
| 0–1 | >99% | ||||
| 20–44 | 82% | ||||
| 45–54 | 68% | ||||
| 55–64 | 69% | ||||
| 65–74 | 63% | ||||
| 75–84 | 53% | ||||
| ≥85 | 65% | ||||
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| Probability of recovery after experiencing critical symptoms | Probability that an infected patient with critical symptoms will recover once the critical symptomatic phase is over. This parameter is a function of age. |
| Age |
| CDC and Wisconsin Department of Health Services[ |
| 0–19 | >99% | ||||
| 20–44 | 95% | ||||
| 45–54 | 92% | ||||
| 55–64 | 75% | ||||
| 65–74 | 72% | ||||
| 75–84 | 64% | ||||
| ≥85 | 9% | ||||
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| Probability that an infected patient with critical symptoms needs ventilator support | Probability that an infected patient with critical symptoms will need mechanical ventilator support during their ICU stay |
| 46% | Literature[ | |
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| Number of contacts per person without any social distancing intervention | Number of people that an individual has a contact that likely produces a transmission opportunity. This parameter represents the number of such contacts. This parameter assumes no intervention is implemented. |
| 10 | Calibration and literature[ | |
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| Number of contagious days of an exposed patient | Exposed individuals could be contagious prior to showing any symptoms of the disease. This parameter represents the number of days in the end of incubation period and prior to showing mild symptoms when exposed patients transmit the disease. |
| 2 | Literature[ | |
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| Probability that an exposed patient will transmit SARS-CoV-2 to a susceptible individual with a close contact | Probability that an asymptomatic patient within the last few days of the incubation period will successfully transmit SARS-CoV-2 to a susceptible patient who is in close contact |
| 0.0418 | Calibration and literature[ | |
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| Probability that a patient with mild to moderate symptoms and not tested positive will transmit SARS-CoV-2 to a susceptible individual with a close contact | Probability that a patient with mild to moderate symptoms and not tested positive will successfully transmit SARS-CoV-2 to a susceptible patient who is in close contact. |
| 0.0418 | Calibration and literature[ | |
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| Probability that a patient with mild to moderate symptoms and tested positive will transmit SARS-CoV-2 to a susceptible individual with a close contact | Probability that a patient with mild to moderate symptoms and tested positive will successfully transmit SARS-CoV-2 to a susceptible patient who is in close contact. |
| 0.0418 | Calibration and literature[ | |
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| Relative transmissibility of a patient with severe symptoms compared to a patient with mild to moderate symptoms and tested positive | This parameter describes the probability that a patient with severe infections transmits the disease ( |
| 0% | Not applicable | |
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| Relative transmissibility of a patient with critical symptoms compared to a patient with mild to moderate symptoms and tested positive | This parameter describes the probability that a patient with critical infections transmits the disease ( |
| 0% | Not applicable | |
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| Baseline probability of testing with mild to moderate symptoms | The baseline probability that a patient who experiences mild to moderate symptoms will be tested positive with COVID-19, representing limited testing capacity and cases where some patients do not feel mild symptoms to make them request for testing, additional testing capacity increases this probability | 75% | Literature and calibration[ | ||
Input parameters used to apply COVAM to Dane County, Milwaukee, and NYC
| Name | Description | Value for Dane County | Value for Milwaukee | Value for NYC | Source | |||
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| Population | Number of people living in the region | 542,364 | 1,576,236 | 8,398,748 | US census data[ | |||
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| Simulation start date | The date when the simulation starts | March 4, 2020 | March 4, 2020 | March 4, 2020 | Not applicable | |||
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| Number of initial exposures | The number of individuals who were exposed to COVID-19 at the beginning of the simulation | 1 | 3 | 16 | Calibration | |||
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| Number of imported cases and dates | Number of individuals who are exposed to COVID-19 from outside of the region per day and the dates for importing cases | 3 per day between March 5, 2020 and March 25, 2020, 1 per day afterwards | 6 per day between March 5, 2020 and April 3, 2020, 3 per day afterwards | 160 per day between March 5, 2020 and April 3, 2020, 80 per day afterwards | Calibration | |||
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| Number of close contacts per person per day without any social distancing intervention | Number of people that an individual has a contact that produces a transmission opportunity. This parameter assumes that the schools are closed. | 10 | 10 | 20 | Calibration and literature[ | |||
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| School effect | % increase in the number of daily close contacts when the schools are open | 40% | 40% | 40% | Literature[ | |||
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| Adherence to social distancing | % of individuals who are following the social distancing guidelines, which is equivalent to a % drop in average number of contacts per person | Mar 4–11: 0% | Mar 4–11: 0% | Mar 4–11: 0% | Mobile phone data and calibration[ | |||
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| Probability of testing | The probability that a patient who experiences mild to moderate symptoms will be tested positive with COVID-19 | 75% until April 15, 80% between April 15 and May 10, 90% afterwards | 75% until April 15, 80% between April 15 and May 10, 90% afterwards | 75% until April 15, 80% between April 15 and May 10, 90% afterwards | Literature and calibration[ | |||
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| Demographics | % of the individuals in different age groups | Age | Prop. | Age | Prop. | Age | Prop. | US census data[ |
| 0–19 | 20.8% | 0–19 | 28.6% | 0–19 | 23.2% | |||
| 20–44 | 46.5% | 20–44 | 36.2% | 20–44 | 38.6% | |||
| 45–54 | 10.3% | 45–54 | 13.7% | 45–54 | 13.0% | |||
| 55–64 | 10.2% | 55–64 | 8.5% | 55–64 | 11.7% | |||
| 65–74 | 7.4% | 65–74 | 6.6% | 65–74 | 7.1% | |||
| 75–84 | 3.3% | 75–84 | 4.7% | 75–84 | 3.4% | |||
| ≥85 | 1.5% | ≥85 | 1.0% | ≥85 | 1.9% | |||
Milwaukee Metro area consists of four counties, including Milwaukee County, Waukesha County, Washington County, and Ozaukee County
Prop.= proportion of the population in this age group.
Figure 2.Model validation results for the base case.
In each of the following figures, red dots represent actual observed cumulative number of confirmed cases, black solid line represents the model’s predictions, and error bars around the black solid line represent 95% confidence intervals for the model’s predictions based on 100 replications, green dotted line represents the date after which all model input parameters were fixed except adherence to social distancing measures, and blue dashed line represents the date after which no model input parameter was modified.
Figure 3.Impact of adherence to social distancing on the total number of confirmed cases in different dates (a) Dane County (b) Milwaukee (c) NYC
Figure 4.Comparison of total number of confirmed cases over time for implementing social distancing in different dates (a) Dane County (b) Milwaukee (c) NYC
Impact of easing social distancing measures on the total number of confirmed cases in different dates in NYC
| Total number of infections by | Easing social distancing measures on June 1 | Easing social distancing measures on June 15 | Easing social distancing measures on July 1 | |||
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| DAE 10% | DAE 20% | DAE 10% | DAE 20% | DAE 10% | DAE 20% | |
| June 30 | 239,605 | 325,510 | 218,096 | 224,575 | 213,910 | 213,910 |
| July 31 | 379,858 | 2521140 | 275,587 | 711,792 | 235,866 | 287,118 |
| August 31 | 807,300 | 5,735,160 | 480,114 | 4,576,610 | 328,531 | 1,834,100 |
DAE: Drop in adherence rates after easing social distancing measures. A value of 10% and 20% DAE implies that adherence to social distancing measures after the date of easing is at 70% and 60%, in NYC, respectively.