Literature DB >> 32572266

Detection of renal cell carcinoma using plasma and urine cell-free DNA methylomes.

Pier Vitale Nuzzo1,2,3, Jacob E Berchuck1,2, Keegan Korthauer4,5, Sandor Spisak2, Amin H Nassar1,2, Sarah Abou Alaiwi1,2, Ankur Chakravarthy6, Shu Yi Shen6, Ziad Bakouny1, Francesco Boccardo3,7, John Steinharter1, Gabrielle Bouchard1, Catherine R Curran1, Wenting Pan1, Sylvan C Baca1,2,8, Ji-Heui Seo1,2, Gwo-Shu Mary Lee1,2, M Dror Michaelson9, Steven L Chang10, Sushrut S Waikar11,12, Guru Sonpavde1, Rafael A Irizarry13,14, Mark Pomerantz1,2, Daniel D De Carvalho6,15, Toni K Choueiri16,17, Matthew L Freedman18,19,20.   

Abstract

Improving early cancer detection has the potential to substantially reduce cancer-related mortality. Cell-free methylated DNA immunoprecipitation and high-throughput sequencing (cfMeDIP-seq) is a highly sensitive assay capable of detecting early-stage tumors. We report accurate classification of patients across all stages of renal cell carcinoma (RCC) in plasma (area under the receiver operating characteristic (AUROC) curve of 0.99) and demonstrate the validity of this assay to identify patients with RCC using urine cell-free DNA (cfDNA; AUROC of 0.86).

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Year:  2020        PMID: 32572266      PMCID: PMC8288043          DOI: 10.1038/s41591-020-0933-1

Source DB:  PubMed          Journal:  Nat Med        ISSN: 1078-8956            Impact factor:   53.440


  1 in total

1.  Serum DNA hypermethylation in patients with kidney cancer: results of a prospective study.

Authors:  Stefan Hauser; Tobias Zahalka; Guido Fechner; Stefan C Müller; Jörg Ellinger
Journal:  Anticancer Res       Date:  2013-10       Impact factor: 2.480

  1 in total
  48 in total

Review 1.  Liquid biopsy in lymphoma: Molecular methods and clinical applications.

Authors:  Melita Cirillo; Alexander F M Craig; Sven Borchmann; David M Kurtz
Journal:  Cancer Treat Rev       Date:  2020-09-22       Impact factor: 12.111

2.  Canadian Urological Association guideline: Management of small renal masses - Full-text.

Authors:  Patrick O Richard; Philippe D Violette; Bimal Bhindi; Rodney H Breau; Wassim Kassouf; Luke T Lavallée; Michael Jewett; John R Kachura; Anil Kapoor; Maxine Noel-Lamy; Michael Ordon; Stephen E Pautler; Frédéric Pouliot; Alan I So; Ricardo A Rendon; Simon Tanguay; Christine Collins; Maryam Kandi; Bobby Shayegan; Andrew Weller; Antonio Finelli; Andrea Kokorovic; Jay Nayak
Journal:  Can Urol Assoc J       Date:  2022-02       Impact factor: 1.862

Review 3.  DNA methylation-based predictors of health: applications and statistical considerations.

Authors:  Paul D Yousefi; Matthew Suderman; Ryan Langdon; Oliver Whitehurst; George Davey Smith; Caroline L Relton
Journal:  Nat Rev Genet       Date:  2022-03-18       Impact factor: 53.242

4.  Cancer Detection and Classification by CpG Island Hypermethylation Signatures in Plasma Cell-Free DNA.

Authors:  Jinyong Huang; Alex C Soupir; Brian D Schlick; Mingxiang Teng; Ibrahim H Sahin; Jennifer B Permuth; Erin M Siegel; Brandon J Manley; Bruna Pellini; Liang Wang
Journal:  Cancers (Basel)       Date:  2021-11-09       Impact factor: 6.639

5.  Methylation extends the reach of liquid biopsy in cancer detection.

Authors:  Wenyuan Li; Xianghong Jasmine Zhou
Journal:  Nat Rev Clin Oncol       Date:  2020-11       Impact factor: 66.675

6.  Plasma KIM-1 Is Associated with Recurrence Risk after Nephrectomy for Localized Renal Cell Carcinoma: A Trial of the ECOG-ACRIN Research Group (E2805).

Authors:  Wenxin Xu; Mäneka Puligandla; Brian Halbert; Naomi B Haas; Keith T Flaherty; Robert G Uzzo; Janice P Dutcher; Robert S DiPaola; Venkata Sabbisetti; Rupal S Bhatt
Journal:  Clin Cancer Res       Date:  2021-04-08       Impact factor: 12.531

Review 7.  The Role of Epigenetics in the Progression of Clear Cell Renal Cell Carcinoma and the Basis for Future Epigenetic Treatments.

Authors:  Javier C Angulo; Claudia Manini; Jose I López; Angel Pueyo; Begoña Colás; Santiago Ropero
Journal:  Cancers (Basel)       Date:  2021-04-25       Impact factor: 6.639

Review 8.  Liquid Biomarkers for Improved Diagnosis and Classification of CNS Tumors.

Authors:  Severa Bunda; Jeffrey A Zuccato; Mathew R Voisin; Justin Z Wang; Farshad Nassiri; Vikas Patil; Sheila Mansouri; Gelareh Zadeh
Journal:  Int J Mol Sci       Date:  2021-04-27       Impact factor: 5.923

Review 9.  Integrated Analysis of Whole Genome and Epigenome Data Using Machine Learning Technology: Toward the Establishment of Precision Oncology.

Authors:  Ken Asada; Syuzo Kaneko; Ken Takasawa; Hidenori Machino; Satoshi Takahashi; Norio Shinkai; Ryo Shimoyama; Masaaki Komatsu; Ryuji Hamamoto
Journal:  Front Oncol       Date:  2021-05-12       Impact factor: 6.244

10.  Cell-free DNA methylome profiling by MBD-seq with ultra-low input.

Authors:  Jinyong Huang; Alex C Soupir; Liang Wang
Journal:  Epigenetics       Date:  2021-03-16       Impact factor: 4.528

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