Literature DB >> 32571877

Crystal structures of human PAICS reveal substrate and product binding of an emerging cancer target.

Jana Škerlová1, Judith Unterlass2, Mona Göttmann2, Petra Marttila2, Evert Homan2, Thomas Helleday2,3, Ann-Sofie Jemth4, Pål Stenmark5,6.   

Abstract

The bifunctional human enzyme phosphoribosylaminoimidazole carboxylase and phosphoribosylaminoimidazolesuccinocarboxamide synthetase (PAICS) catalyzes two essential steps in the de novo purine biosynthesis pathway. PAICS is overexpressed in many cancers and could be a promising target for the development of cancer therapeutics. Here, using gene knockdowns and clonogenic survival and cell viability assays, we demonstrate that PAICS is required for growth and survival of prostate cancer cells. PAICS catalyzes the carboxylation of aminoimidazole ribonucleotide (AIR) and the subsequent conversion of carboxyaminoimidazole ribonucleotide (CAIR) and l-aspartate to N-succinylcarboxamide-5-aminoimidazole ribonucleotide (SAICAR). Of note, we present the first structures of human octameric PAICS in complexes with native ligands. In particular, we report the structure of PAICS with CAIR bound in the active sites of both domains and SAICAR bound in one of the SAICAR synthetase domains. Moreover, we report the PAICS structure with SAICAR and an ATP analog occupying the SAICAR synthetase active site. These structures provide insight into substrate and product binding and the architecture of the active sites, disclosing important structural information for rational design of PAICS inhibitors as potential anticancer drugs.
© 2020 Škerlová et al.

Entities:  

Keywords:  N-succinylcarboxamide-5-aminoimidazole ribonucleotide (SAICAR); cancer target; cancer therapy; carboxyaminoimidazole ribonucleotide (CAIR); de novo purine biosynthesis; drug design; nucleoside/nucleotide biosynthesis; nucleotide metabolism; phosphoribosylaminoimidazole carboxylase and phosphoribosylaminoimidazolesuccinocarboxamide synthetase (PAICS); prostate cancer; purine; rational drug design; structural biology

Mesh:

Substances:

Year:  2020        PMID: 32571877      PMCID: PMC7450103          DOI: 10.1074/jbc.RA120.013695

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  43 in total

1.  Free R value: a novel statistical quantity for assessing the accuracy of crystal structures.

Authors:  A T Brünger
Journal:  Nature       Date:  1992-01-30       Impact factor: 49.962

2.  Biochemical and structural studies of N5-carboxyaminoimidazole ribonucleotide mutase from the acidophilic bacterium Acetobacter aceti.

Authors:  Charles Z Constantine; Courtney M Starks; Christopher P Mill; Aaron E Ransome; Steven J Karpowicz; Julie A Francois; Rena A Goodman; T Joseph Kappock
Journal:  Biochemistry       Date:  2006-07-11       Impact factor: 3.162

3.  Treponema denticola PurE Is a bacterial AIR carboxylase.

Authors:  Sylvain Tranchimand; Courtney M Starks; Irimpan I Mathews; Susan C Hockings; T Joseph Kappock
Journal:  Biochemistry       Date:  2011-05-06       Impact factor: 3.162

4.  Nonenzymatic synthesis of 5-aminoimidazole ribonucleoside and recognition of its facile rearrangement.

Authors:  M P Groziak; B Bhat; N J Leonard
Journal:  Proc Natl Acad Sci U S A       Date:  1988-10       Impact factor: 11.205

5.  Cell cycle and aging, morphogenesis, and response to stimuli genes are individualized biomarkers of glioblastoma progression and survival.

Authors:  Nicola V L Serão; Kristin R Delfino; Bruce R Southey; Jonathan E Beever; Sandra L Rodriguez-Zas
Journal:  BMC Med Genomics       Date:  2011-06-07       Impact factor: 3.063

6.  hMYH and hMTH1 cooperate for survival in mismatch repair defective T-cell acute lymphoblastic leukemia.

Authors:  S Eshtad; Z Mavajian; S G Rudd; T Visnes; J Boström; M Altun; T Helleday
Journal:  Oncogenesis       Date:  2016-12-05       Impact factor: 7.485

7.  Polder maps: improving OMIT maps by excluding bulk solvent.

Authors:  Dorothee Liebschner; Pavel V Afonine; Nigel W Moriarty; Billy K Poon; Oleg V Sobolev; Thomas C Terwilliger; Paul D Adams
Journal:  Acta Crystallogr D Struct Biol       Date:  2017-02-01       Impact factor: 7.652

8.  PAICS, a De Novo Purine Biosynthetic Enzyme, Is Overexpressed in Pancreatic Cancer and Is Involved in Its Progression.

Authors:  Sumit Agarwal; Balabhadrapatruni V S K Chakravarthi; Hyung-Gyoon Kim; Nirzari Gupta; Kevin Hale; Sai Akshaya Hodigere Balasubramanya; Patsy G Oliver; Dafydd G Thomas; Isam-Eldin A Eltoum; Donald J Buchsbaum; Upender Manne; Sooryanarayana Varambally
Journal:  Transl Oncol       Date:  2020-05-15       Impact factor: 4.243

9.  Knockdown of PAICS inhibits malignant proliferation of human breast cancer cell lines.

Authors:  Minjun Meng; Yanling Chen; Jianbo Jia; Lianghui Li; Sumei Yang
Journal:  Biol Res       Date:  2018-08-10       Impact factor: 5.612

10.  Comprehensive genomic characterization of cutaneous malignant melanoma cell lines derived from metastatic lesions by whole-exome sequencing and SNP array profiling.

Authors:  Ingrid Cifola; Alessandro Pietrelli; Clarissa Consolandi; Marco Severgnini; Eleonora Mangano; Vincenzo Russo; Gianluca De Bellis; Cristina Battaglia
Journal:  PLoS One       Date:  2013-05-21       Impact factor: 3.240

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  5 in total

1.  Evidence Supporting Substrate Channeling between Domains of Human PAICS: A Time-Course Analysis of 13C-Bicarbonate Incorporation.

Authors:  Hyungjoo Shon; Elena A Matveeva; Ella C Jull; Yijia Hu; Tiffany A Coupet; Young-Sam Lee
Journal:  Biochemistry       Date:  2022-03-14       Impact factor: 3.162

Review 2.  From purines to purinergic signalling: molecular functions and human diseases.

Authors:  Zhao Huang; Na Xie; Peter Illes; Francesco Di Virgilio; Henning Ulrich; Alexey Semyanov; Alexei Verkhratsky; Beata Sperlagh; Shu-Guang Yu; Canhua Huang; Yong Tang
Journal:  Signal Transduct Target Ther       Date:  2021-04-28

3.  Reaction Mechanism of Human PAICS Elucidated by Quantum Chemical Calculations.

Authors:  Mario Prejanò; Jana Škerlová; Pål Stenmark; Fahmi Himo
Journal:  J Am Chem Soc       Date:  2022-08-01       Impact factor: 16.383

4.  Multienzyme interactions of the de novo purine biosynthetic protein PAICS facilitate purinosome formation and metabolic channeling.

Authors:  Jingxuan He; Ling-Nan Zou; Vidhi Pareek; Stephen J Benkovic
Journal:  J Biol Chem       Date:  2022-03-21       Impact factor: 5.486

Review 5.  Human de novo purine biosynthesis.

Authors:  Vidhi Pareek; Anthony M Pedley; Stephen J Benkovic
Journal:  Crit Rev Biochem Mol Biol       Date:  2020-11-12       Impact factor: 8.250

  5 in total

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