Literature DB >> 32569518

How Does the Ribosome Fold the Proteome?

Anaïs M E Cassaignau1, Lisa D Cabrita1, John Christodoulou1.   

Abstract

Folding of polypeptides begins during their synthesis on ribosomes. This process has evolved as a means for the cell to maintain proteostasis, by mitigating the risk of protein misfolding and aggregation. The capacity to now depict this cellular feat at increasingly higher resolution is providing insight into the mechanistic determinants that promote successful folding. Emerging from these studies is the intimate interplay between protein translation and folding, and within this the ribosome particle is the key player. Its unique structural properties provide a specialized scaffold against which nascent polypeptides can begin to form structure in a highly coordinated, co-translational manner. Here, we examine how, as a macromolecular machine, the ribosome modulates the intrinsic dynamic properties of emerging nascent polypeptide chains and guides them toward their biologically active structures.

Entities:  

Keywords:  NMR spectroscopy; co-translational folding; protein folding; protein misfolding; protein synthesis; ribosome-bound nascent chain; structural biology

Mesh:

Substances:

Year:  2020        PMID: 32569518     DOI: 10.1146/annurev-biochem-062917-012226

Source DB:  PubMed          Journal:  Annu Rev Biochem        ISSN: 0066-4154            Impact factor:   27.258


  24 in total

1.  Cotranslational folding and assembly of the dimeric Escherichia coli inner membrane protein EmrE.

Authors:  Daphne Mermans; Felix Nicolaus; Klara Fleisch; Gunnar von Heijne
Journal:  Proc Natl Acad Sci U S A       Date:  2022-08-22       Impact factor: 12.779

2.  The ribosome stabilizes partially folded intermediates of a nascent multi-domain protein.

Authors:  Sammy H S Chan; Tomasz Włodarski; Julian O Streit; Anaïs M E Cassaignau; Lauren F Woodburn; Minkoo Ahn; Georg Johannes Freiherr von Sass; Christopher A Waudby; Nediljko Budisa; Lisa D Cabrita; John Christodoulou
Journal:  Nat Chem       Date:  2022-08-04       Impact factor: 24.274

3.  Co-translational folding of nascent polypeptides: Multi-layered mechanisms for the efficient biogenesis of functional proteins.

Authors:  Kevin Maciuba; Nandakumar Rajasekaran; Xiuqi Chen; Christian M Kaiser
Journal:  Bioessays       Date:  2021-05-13       Impact factor: 4.653

4.  Optimal design of adaptively sampled NMR experiments for measurement of methyl group dynamics with application to a ribosome-nascent chain complex.

Authors:  Christopher A Waudby; Charles Burridge; John Christodoulou
Journal:  J Magn Reson       Date:  2021-02-18       Impact factor: 2.734

Review 5.  Generating Ensembles of Dynamic Misfolding Proteins.

Authors:  Theodoros K Karamanos; Arnout P Kalverda; Sheena E Radford
Journal:  Front Neurosci       Date:  2022-03-31       Impact factor: 4.677

6.  Interactome Mapping of eIF3A in a Colon Cancer and an Immortalized Embryonic Cell Line Using Proximity-Dependent Biotin Identification.

Authors:  Diep-Khanh Vo; Alexander Engler; Darko Stoimenovski; Roland Hartig; Thilo Kaehne; Thomas Kalinski; Michael Naumann; Johannes Haybaeck; Norbert Nass
Journal:  Cancers (Basel)       Date:  2021-03-14       Impact factor: 6.639

7.  Statistical Evidence for a Helical Nascent Chain.

Authors:  Leonor Cruzeiro; Andrew C Gill; J Chris Eilbeck
Journal:  Biomolecules       Date:  2021-02-26

Review 8.  Fidelity of Cotranslational Protein Targeting to the Endoplasmic Reticulum.

Authors:  Hao-Hsuan Hsieh; Shu-Ou Shan
Journal:  Int J Mol Sci       Date:  2021-12-28       Impact factor: 5.923

9.  Common sequence motifs of nascent chains engage the ribosome surface and trigger factor.

Authors:  Annika Deckert; Anaïs M E Cassaignau; Xiaolin Wang; Tomasz Włodarski; Sammy H S Chan; Christopher A Waudby; John P Kirkpatrick; Michele Vendruscolo; Lisa D Cabrita; John Christodoulou
Journal:  Proc Natl Acad Sci U S A       Date:  2021-12-28       Impact factor: 12.779

Review 10.  Is Protein Folding a Thermodynamically Unfavorable, Active, Energy-Dependent Process?

Authors:  Irina Sorokina; Arcady R Mushegian; Eugene V Koonin
Journal:  Int J Mol Sci       Date:  2022-01-04       Impact factor: 5.923

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