Literature DB >> 32558828

Learning to Evaluate Color Similarity for Histopathology Images using Triplet Networks.

Anirudh Choudhary1, Hang Wu1, Li Tong2, May D Wang2.   

Abstract

Stain normalization is a crucial pre-processing step for histopathological image processing, and can help improve the accuracy of downstream tasks such as segmentation and classification. To evaluate the effectiveness of stain normalization methods, various metrics based on color-perceptual similarity and stain color evaluation have been proposed. However, there still exists a huge gap between metric evaluation and human perception, given the limited explainability power of existing metrics and inability to combine color and semantic information efficiently. Inspired by the effectiveness of deep neural networks in evaluating perceptual similarity of natural images, in this paper, we propose TriNet-P, a color-perceptual similarity metric for whole slide images, based on deep metric embeddings. We evaluate the proposed approach using four publicly available breast cancer histological datasets. The benefit of our approach is its representation efficiency of the perceptual factors associated with H&E stained images with minimal human intervention. We show that our metric can capture the semantic similarities, both at subject (patient) and laboratory levels, and leads to better performance in image retrieval and clustering tasks.

Entities:  

Keywords:  Metric Embedding; Perceptual Similarity; Representation Learning; Whole-Slide Imaging

Year:  2019        PMID: 32558828      PMCID: PMC7302047          DOI: 10.1145/3307339.3342170

Source DB:  PubMed          Journal:  ACM BCB


  15 in total

1.  Image quality assessment: from error visibility to structural similarity.

Authors:  Zhou Wang; Alan Conrad Bovik; Hamid Rahim Sheikh; Eero P Simoncelli
Journal:  IEEE Trans Image Process       Date:  2004-04       Impact factor: 10.856

2.  Quaternion structural similarity: a new quality index for color images.

Authors:  Amir Kolaman; Orly Yadid-Pecht
Journal:  IEEE Trans Image Process       Date:  2011-12-23       Impact factor: 10.856

3.  Blind image quality assessment: from natural scene statistics to perceptual quality.

Authors:  Anush Krishna Moorthy; Alan Conrad Bovik
Journal:  IEEE Trans Image Process       Date:  2011-04-25       Impact factor: 10.856

4.  FSIM: a feature similarity index for image quality assessment.

Authors:  Lin Zhang; Lei Zhang; Xuanqin Mou; David Zhang
Journal:  IEEE Trans Image Process       Date:  2011-01-31       Impact factor: 10.856

5.  Structure-Preserving Color Normalization and Sparse Stain Separation for Histological Images.

Authors:  Abhishek Vahadane; Tingying Peng; Amit Sethi; Shadi Albarqouni; Lichao Wang; Maximilian Baust; Katja Steiger; Anna Melissa Schlitter; Irene Esposito; Nassir Navab
Journal:  IEEE Trans Med Imaging       Date:  2016-04-27       Impact factor: 10.048

6.  Adversarial Stain Transfer for Histopathology Image Analysis.

Authors:  Aicha Bentaieb; Ghassan Hamarneh
Journal:  IEEE Trans Med Imaging       Date:  2018-03       Impact factor: 10.048

7.  Automatic batch-invariant color segmentation of histological cancer images.

Authors:  Sonal Kothari; John H Phan; Richard A Moffitt; Todd H Stokes; Shelby E Hassberger; Qaiser Chaudry; Andrew N Young; May D Wang
Journal:  Proc IEEE Int Symp Biomed Imaging       Date:  2011 Mar-Apr

8.  Stain Normalization using Sparse AutoEncoders (StaNoSA): Application to digital pathology.

Authors:  Andrew Janowczyk; Ajay Basavanhally; Anant Madabhushi
Journal:  Comput Med Imaging Graph       Date:  2016-05-16       Impact factor: 4.790

Review 9.  Pathology imaging informatics for quantitative analysis of whole-slide images.

Authors:  Sonal Kothari; John H Phan; Todd H Stokes; May D Wang
Journal:  J Am Med Inform Assoc       Date:  2013-08-19       Impact factor: 4.497

10.  An alternative reference space for H&E color normalization.

Authors:  Mark D Zarella; Chan Yeoh; David E Breen; Fernando U Garcia
Journal:  PLoS One       Date:  2017-03-29       Impact factor: 3.240

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.