Literature DB >> 32553663

An integrated chemical environment with tools for chemical safety testing.

Shannon Bell1, Jaleh Abedini2, Patricia Ceger3, Xiaoqing Chang4, Bethany Cook5, Agnes L Karmaus6, Isabel Lea7, Kamel Mansouri8, Jason Phillips9, Eric McAfee10, Ruhi Rai11, John Rooney12, Catherine Sprankle13, Arpit Tandon14, David Allen15, Warren Casey16, Nicole Kleinstreuer17.   

Abstract

Moving toward species-relevant chemical safety assessments and away from animal testing requires access to reliable data to develop and build confidence in new approaches. The Integrated Chemical Environment (ICE) provides tools and curated data centered around chemical safety assessment. This article describes updates to ICE, including improved accessibility and interpretability of in vitro data via mechanistic target mapping and enhanced interactive tools for in vitro to in vivo extrapolation (IVIVE). Mapping of in vitro assay targets to toxicity endpoints of regulatory importance uses literature-based mode-of-action information and controlled terminology from existing knowledge organization systems to support data interoperability with external resources. The most recent ICE update includes Tox21 high-throughput screening data curated using analytical chemistry data and assay-specific parameters to eliminate potential artifacts or unreliable activity. Also included are physicochemical/ADME parameters for over 800,000 chemicals predicted by quantitative structure-activity relationship models. These parameters are used by the new ICE IVIVE tool in combination with the U.S. Environmental Protection Agency's httk R package to estimate in vivo exposures corresponding to in vitro bioactivity concentrations from stored or user-defined assay data. These new ICE features allow users to explore the applications of an expanded data space and facilitate building confidence in non-animal approaches. Published by Elsevier Ltd.

Entities:  

Keywords:  IVIVE; Non-animal methods; Regulatory toxicology

Year:  2020        PMID: 32553663      PMCID: PMC7393692          DOI: 10.1016/j.tiv.2020.104916

Source DB:  PubMed          Journal:  Toxicol In Vitro        ISSN: 0887-2333            Impact factor:   3.500


  8 in total

1.  Impact of High-Throughput Model Parameterization and Data Uncertainty on Thyroid-Based Toxicological Estimates for Pesticide Chemicals.

Authors:  Jeffrey M Carlson; Patricia A Janulewicz; Nicole C Kleinstreuer; Wendy Heiger-Bernays
Journal:  Environ Sci Technol       Date:  2022-04-21       Impact factor: 11.357

Review 2.  IVIVE: Facilitating the Use of In Vitro Toxicity Data in Risk Assessment and Decision Making.

Authors:  Xiaoqing Chang; Yu-Mei Tan; David G Allen; Shannon Bell; Paul C Brown; Lauren Browning; Patricia Ceger; Jeffery Gearhart; Pertti J Hakkinen; Shruti V Kabadi; Nicole C Kleinstreuer; Annie Lumen; Joanna Matheson; Alicia Paini; Heather A Pangburn; Elijah J Petersen; Emily N Reinke; Alexandre J S Ribeiro; Nisha Sipes; Lisa M Sweeney; John F Wambaugh; Ronald Wange; Barbara A Wetmore; Moiz Mumtaz
Journal:  Toxics       Date:  2022-05-01

3.  Analysis of variability in the rabbit skin irritation assay.

Authors:  John P Rooney; Neepa Y Choksi; Patricia Ceger; Amber B Daniel; James Truax; David Allen; Nicole Kleinstreuer
Journal:  Regul Toxicol Pharmacol       Date:  2021-03-20       Impact factor: 3.598

4.  Use of computational toxicology tools to predict in vivo endpoints associated with Mode of Action and the endocannabinoid system: A case study with chlorpyrifos, chlorpyrifos-oxon and Δ9Tetrahydrocannabinol.

Authors:  Marilyn Silva; Ryan Kin-Hin Kwok
Journal:  Curr Res Toxicol       Date:  2022-02-07

5.  Evaluation of Inhalation Exposures and Potential Health Impacts of Ingredient Mixtures Using in vitro to in vivo Extrapolation.

Authors:  Jingjie Zhang; Xiaoqing Chang; Tessa L Holland; David E Hines; Agnes L Karmaus; Shannon Bell; K Monica Lee
Journal:  Front Toxicol       Date:  2022-02-02

6.  Application of an Accessible Interface for Pharmacokinetic Modeling and In Vitro to In Vivo Extrapolation.

Authors:  David E Hines; Shannon Bell; Xiaoqing Chang; Kamel Mansouri; David Allen; Nicole Kleinstreuer
Journal:  Front Pharmacol       Date:  2022-04-13       Impact factor: 5.988

7.  Investigating Molecular Mechanisms of Immunotoxicity and the Utility of ToxCast for Immunotoxicity Screening of Chemicals Added to Food.

Authors:  Olga V Naidenko; David Q Andrews; Alexis M Temkin; Tasha Stoiber; Uloma Igara Uche; Sydney Evans; Sean Perrone-Gray
Journal:  Int J Environ Res Public Health       Date:  2021-03-24       Impact factor: 3.390

8.  The potential of mechanistic information organised within the AOP framework to increase regulatory uptake of the developmental neurotoxicity (DNT) in vitro battery of assays.

Authors:  Magdalini Sachana; Catherine Willett; Francesca Pistollato; Anna Bal-Price
Journal:  Reprod Toxicol       Date:  2021-06-17       Impact factor: 3.143

  8 in total

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