Literature DB >> 32550342

Novel deletion alleles of a C. elegans gene Y73E7A.1, named as tm6429 and tm6475.

Yuji Suehiro1, Sawako Yoshina1, Sayaka Hori1, Shohei Mitani1.   

Abstract

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Year:  2017        PMID: 32550342      PMCID: PMC7255859          DOI: 10.17912/W2808M

Source DB:  PubMed          Journal:  MicroPubl Biol        ISSN: 2578-9430


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Description

We report and as novel deletion alleles of the gene that is a homologue of mammalian Coiled-coil domain containing 124 (Ccdc124)1. The Ccdc124 is a conserved gene from invertebrates to human. In human cell lines, Ccdc124 is a component of the centrosome during interphase and at the G2/M transition. During cell division, Ccdc124 relocates to the midbody at telophase and acts as an essential molecular component in cytokinesis2. The alleles were isolated from the comprehensive screening of gene deletions generated by TMP/UV3. In the screening, both the alleles were detected by nested PCR using the following primer sets, 5’-GTGTGAATCGAGGAGGCGCA-3’ and 5’-TTTCCAGTCCGGCAGGCGAT-3’ for first round PCR and 5’- AACGGCAAACGCGCTCTATG-3’ and 5’- CGTGTGCACGTGGAAGTCCA-3’ for second round PCR. By Sanger sequencing, the 30bp flanking sequences of the alleles and were identified as TTTTAAATCGATTTTTGAGCACCAAAATTA- [355 bp deletion + 1 bp insertion (T)] – TTAAAAATGAGAAAAAATGGGGAAAAAATT and CAAACGCGCTCTATGGAGAATGTGGAATTA- [242 bp deletion] – TTTTATATAGGATTTTAATTTTCAGGCCAC, respectively. Based on the information about the splicing isoforms of (WormBase, http://www.wormbase.org, WS259), the start codon of and transcripts are deleted in and , respectively (Fig. 1), suggesting that those alleles may be usable for the analysis of isoform specific function. ​

Reagents

FX06429 () I (Not outcrossed) FX06475 () I (Not outcrossed)
  3 in total

1.  Characterization of mutations induced by ethyl methanesulfonate, UV, and trimethylpsoralen in the nematode Caenorhabditis elegans.

Authors:  K Gengyo-Ando; S Mitani
Journal:  Biochem Biophys Res Commun       Date:  2000-03-05       Impact factor: 3.575

2.  OrthoList: a compendium of C. elegans genes with human orthologs.

Authors:  Daniel D Shaye; Iva Greenwald
Journal:  PLoS One       Date:  2011-05-25       Impact factor: 3.240

3.  Coiled-coil domain containing protein 124 is a novel centrosome and midbody protein that interacts with the Ras-guanine nucleotide exchange factor 1B and is involved in cytokinesis.

Authors:  Pelin Telkoparan; Serap Erkek; Elif Yaman; Hani Alotaibi; Defne Bayık; Uygar H Tazebay
Journal:  PLoS One       Date:  2013-07-19       Impact factor: 3.240

  3 in total

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