| Literature DB >> 32549787 |
Hongyu Zhou1,2, Chufan Zhang3,2, Haoran Li2,4, Lihua Chen2,4, Xi Cheng1,2.
Abstract
BACKGROUND: Endometrial cancer was the commonest gynecological malignancy in developed countries. Despite striking advances in multimodality management, however, for patients in advanced stage, targeted therapy still remained a challenge. Our study aimed to investigate new biomarkers for endometrial cancer and establish a novel risk score system of immune genes in endometrial cancer.Entities:
Keywords: Differentially expressed genes; Endometrial cancer; Prognosis; Risk score; The Cancer Genome Atlas (TCGA) database
Year: 2020 PMID: 32549787 PMCID: PMC7294624 DOI: 10.1186/s12935-020-01317-5
Source DB: PubMed Journal: Cancer Cell Int ISSN: 1475-2867 Impact factor: 5.722
Fig. 1Identification of DEGs. a, b Heatmap and volcano plots of 6268 DEGs in endometrial cancer and normal tissues from TCGA database. c, d Heatmap and volcano plots of 410 immune-related DEGs. The colors in the heatmaps from green to red represent expression level from low to high. The red dots in the volcano plots represent up-regulation, the green dots represent down-regulation and black dots represent genes without differential expression
Fig. 2GO and KEGG enrichment analysis of DEGs. a, b GO analysis. GO analysis divided DEGs into three functional groups: molecular function (MF), biological processes (BP), and cell composition (CC). c, d KEGG analysis of DEGs
Fig. 3Interaction network for immune-specific genes and transcription factors. a, b Heat map and Volcano plots of differentially expressed transcription factors (TFs). The colors in the heatmaps from green to red represent expression level from low to high. The red dots in the volcano plots represent up-regulation, the green dots represent down-regulation and black dots represent TFs without differential expression. c A significant module from protein–protein interaction network
Clinical characteristics of 544 patients with UCEC from TCGA database
| Clinicopathological characteristics | Number (total = 544) (%) | |
|---|---|---|
| Age at diagnosis | 31–90 years (median: 64 years) | |
| Race | ||
| White | 372 | 72.37% |
| Black or African American | 109 | 21.21% |
| Other | 33 | 6.42% |
| Menopause status | ||
| Pre | 52 | 10.46% |
| Post | 445 | 89.54% |
| Surgical approach | ||
| Minimally invasive | 203 | 38.96% |
| Open | 318 | 61.04% |
| Histological type | ||
| Serous endometrial adenocarcinoma | 115 | 21.14% |
| Endometrioid endometrial adenocarcinoma | 407 | 74.82% |
| Mixed serous and endometrioid | 22 | 4.04% |
| Grade | ||
| Low/moderate (G1/G2) | 221 | 40.63% |
| High (G3) | 323 | 59.38% |
| Tumor invasion depth | ||
| < 1/2 | 254 | 55.70% |
| ≥ 1/2 | 202 | 44.30% |
| Tumor status | ||
| Tumor free | 428 | 84.42% |
| With tumor | 79 | 15.58% |
| Residual tumor | ||
| No residual (R0) | 375 | 90.80% |
| With residual (R1/R2) | 38 | 9.20% |
| Peritoneal washing | ||
| Negative | 352 | 85.85% |
| Positive | 58 | 14.15% |
| Pelvic lymph node | ||
| Negative | 368 | 83.26% |
| Positive | 74 | 16.74% |
| Para-aortic lymph node | ||
| Negative | 331 | 89.70% |
| Positive | 38 | 10.30% |
| Stage | ||
| I | 339 | 62.32% |
| II | 52 | 9.56% |
| III | 123 | 22.61% |
| IV | 30 | 5.51% |
Prognostic risk model for endometrial cancer
| Name | Coef | HR; 95% CI | P value |
|---|---|---|---|
| HTR3E | 0.513 | 1.67 (1.34–2.09) | 0.000 |
| CBLC | 0.015 | 1.02 (1.01–1.02) | 0.000 |
| TNF | 0.034 | 1.03 (1.01–1.05) | 0.000 |
| PSMC4 | 0.004 | 1.00 (1.00–1.01) | 0.003 |
| TRAV30 | 0.110 | 1.12 (1.04–1.20) | 0.004 |
| PDIA3 | − 0.004 | 1.00 (0.99–1.00) | 0.004 |
| FGF8 | 0.020 | 1.02 (1.01–1.03) | 0.006 |
| PDGFRA | 0.029 | 1.03 (1.01–1.05) | 0.010 |
| ESRRA | 0.048 | 1.05 (1.01–1.09) | 0.013 |
| SBDS | 0.016 | 1.02 (1.00–1.03) | 0.016 |
| CRHR1 | 0.162 | 1.18 (1.02–1.35) | 0.021 |
| LTA | − 0.819 | 0.44 (0.21–0.93) | 0.031 |
| NR2F1 | 0.019 | 1.02 (1.00–1.04) | 0.032 |
| TNFRSF18 | − 0.028 | 0.97 (0.95–1.00) | 0.038 |
| VIPR2 | − 1.231 | 0.29 (0.08–1.09) | 0.068 |
| LGR5 | 0.007 | 1.01 (1.00–1.01) | 0.068 |
| IL13RA2 | 0.024 | 1.02 (1.00–1.05) | 0.071 |
| PTN | 0.005 | 1.01 (1.00–1.01) | 0.080 |
| BACH2 | − 0.401 | 0.67 (0.42–1.07) | 0.090 |
| GHR | 0.816 | 2.26 (0.86–5.96) | 0.099 |
| ADCYAP1R1 | − 0.047 | 0.95 (0.90–1.01) | 0.133 |
| ORM1 | − 0.027 | 0.97 (0.94–1.01) | 0.148 |
Coef coefficients, HR hazards ratio, CI confidence interval
Fig. 4Construction of risk score system. a Risk score estimated of each patient on the basis of 14 hub genes expression. b ROC curve for the risk model. c Patients were divided into high risk group and low risk group. Survival analysis of the patients is also shown
Fig. 5Validation of the prognostic value of the risk model. a Univariate regression model. b Multi-cox hazards regression model
Univariate and multivariate analysis of risk factors for endometrial cancer
| Characteristics | HR; 95% CI | P value |
|---|---|---|
| Univariate analysis | ||
| Age | 1.03 (1.01–1.06) | 0.002 |
| Grade | 2.65 (1.73–4.08) | 0.000 |
| Menopause status | 0.93 (0.45–1.94) | 0.847 |
| Race | 0.93 (0.65–1.33) | 0.704 |
| Tumor status | 8.45 (5.37–13.31) | 0.000 |
| Histologic type | 2.06 (1.50–2.84) | 0.000 |
| Surgery approach | 0.82 (0.52–1.31) | 0.413 |
| Peritoneal washing | 4.10 (2.39–7.03) | 0.000 |
| Tumor invasion percent | 2.86 (1.73–4.71) | 0.000 |
| Residual tumor | 3.07 (1.68–5.62) | 0.000 |
| Pelvic LN | 4.20 (2.53–6.98) | 0.000 |
| Para-aortic LN | 3.72 (1.98–6.98) | 0.000 |
| Clinical stage | 1.98 (1.63–2.41) | 0.000 |
| Risk score | 1.02 (1.02–1.03) | 0.000 |
| Multivariate analysis | ||
| Age | 1.06 (1.02–1.11) | 0.006 |
| Grade | 1.07 (0.48–2.39) | 0.877 |
| Tumor status | 5.50 (2.13–14.25) | 0.000 |
| Histologic type | 1.06 (0.48–2.36) | 0.879 |
| Peritoneal washing | 4.62 (1.67–12.73) | 0.003 |
| Tumor invasion percent | 0.97 (0.38–2.48) | 0.957 |
| Residual tumor | 0.50 (0.12–2.10) | 0.346 |
| Pelvic LN | 4.20 (1.35–13.09) | 0.013 |
| Para-aortic LN | 2.24 (0.59–8.46) | 0.235 |
| Clinical stage | 0.77 (0.42–1.41) | 0.401 |
| Risk score | 1.14 (1.08–1.21) | 0.000 |
HR hazards ratio, CI confidence interval
Fig. 6Association between the risk model and different clinical characteristics
Fig. 7Survival analysis of the high-risk group and the low-risk group scored by the model in FUSCC validation set. All 34 patients were divided into two groups by the median value of risk scores: the high-risk group and the low-risk group