Literature DB >> 32549689

Genetic relationships and diversity among populations of Paris polyphylla assessed using SCoT and SRAP markers.

Xiaopei Zhao1, Gaofen Zou1, Jie Zhao1, Linyi Hu1, Yuefeng Lan1, Jinling He1.   

Abstract

The genetic diversity of 33 Paris polyphylla samples collected from the Dabie Mountains was analyzed using SCoT and SRAP molecular markers, revealing the genetic relationships among Paris polyphylla resources in the Dabie Mountains at the molecular level and providing a theoretical basis for genetic improvement and conservation. As a result, a total of 134 bands were amplified with 9 SCoT primers, the percentage of polymorphic bands was 100%, the average number of primers amplified was 14.89, the PIC value was 94.83% and the genetic similarity coefficient ranged from 0.463 to 0.896. Ten pairs of SRAP primer combinations amplified 135 bands, including 129 polymorphic bands, and the percentage of polymorphic bands was 95.56%. The average number of polymorphic bands obtained with each pair of SRAP primer combinations was 12.9, the PIC value was 93.91%, and the genetic similarity coefficient ranged from 0.533 to 0.904. This study showed that both SCoT and SRAP markers were suitable for the genetic diversity analysis of P. polyphylla, which belongs to a genus in which SRAP marker technology has not previously been applied, despite its application in a variety of other plants. © Prof. H.S. Srivastava Foundation for Science and Society 2020.

Entities:  

Keywords:  Genetic diversity; Paris polyphylla; SCoT marker; SRAP marker

Year:  2020        PMID: 32549689      PMCID: PMC7266889          DOI: 10.1007/s12298-020-00808-z

Source DB:  PubMed          Journal:  Physiol Mol Biol Plants        ISSN: 0974-0430


  13 in total

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Journal:  Zhong Yao Cai       Date:  2015-07

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Journal:  Proc Natl Acad Sci U S A       Date:  1973-12       Impact factor: 11.205

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Journal:  Theor Appl Genet       Date:  2003-03-19       Impact factor: 5.699

8.  Start Codon Targeted (SCoT) marker reveals genetic diversity of Dendrobium nobile Lindl., an endangered medicinal orchid species.

Authors:  Paromik Bhattacharyya; Suman Kumaria; Shrawan Kumar; Pramod Tandon
Journal:  Gene       Date:  2013-08-11       Impact factor: 3.688

9.  Assessment of genetic diversity in Vigna unguiculata L. (Walp) accessions using inter-simple sequence repeat (ISSR) and start codon targeted (SCoT) polymorphic markers.

Authors:  David Okeh Igwe; Celestine Azubike Afiukwa; Benjamin Ewa Ubi; Kenneth Idika Ogbu; Omena Bernard Ojuederie; George Nkem Ude
Journal:  BMC Genet       Date:  2017-11-17       Impact factor: 2.797

10.  Sequence-related amplified polymorphism (SRAP) markers: A potential resource for studies in plant molecular biology(1.).

Authors:  Daniel W H Robarts; Andrea D Wolfe
Journal:  Appl Plant Sci       Date:  2014-07-11       Impact factor: 1.936

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  1 in total

1.  Exploring genetic variations in threatened medicinal orchids using start codon targeted (SCoT) polymorphism and marker-association with seed morphometric traits.

Authors:  Soheila Gholami; Yavar Vafaee; Farzad Nazari; Abdolbaset Ghorbani
Journal:  Physiol Mol Biol Plants       Date:  2021-03-23
  1 in total

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