| Literature DB >> 32548324 |
Nesimi Uludağ1, Goncagül Serdaroğlu2.
Abstract
Development of efficient sequences for the synthesis of the title compound (2-(2,2-dimethoxyethyl)-1,2,3,4,5,6-hexahydro-1,5-methanoazocino[4,3-b]indole) (7) was described. The title compound was synthesized through several steps starting fromEntities:
Keywords: FMO; FT-IR; NLO; NMR; Organic chemistry; Strychnos alkaloids; Theoretical chemistry
Year: 2020 PMID: 32548324 PMCID: PMC7286972 DOI: 10.1016/j.heliyon.2020.e04105
Source DB: PubMed Journal: Heliyon ISSN: 2405-8440
Scheme 1Reagents and Conditions: a) AcOH, 80 °C, LiCl, H2O; b) LiOH, THF-H2O (3:1), rt; c) CH3OH–H2O, KOH, rt; d) CHCl3, (C2H5)3N, (2,2-dimethoxy)ethylamine, -10 °C; e) Tetrachloro-1,4-benzoquinone (TCB), THF, rt; f) Rh(CO) (PPH3)3, Ph2SiH2, rt.
Figure 1The optimized structures of the lower energy conformers obtained from PES, at B3LYP/6–311++G(d,p) level in the chloroform (CHCl3) phase (the electronic energies are given in hartrees unit; the relative energies are given in kcal/mol).
The selected optimized parameters of two conformers of the compound (7) at 6–311++G(d,p) basis set in CHCl3.
| B3LYP | B3LYP-GD3BJ | ||||
|---|---|---|---|---|---|
| I | II | I | II | ||
| C1–C2 | 1.39 | 1.41 | 1.41 | 1.41 | 1.41 |
| C1–C6 | 1.38 | 1.39 | 1.39 | 1.39 | 1.39 |
| C4–C5 | 1.41 | 1.42 | 1.42 | 1.43 | 1.43 |
| N16–C4 | 1.38 | 1.38 | 1.38 | 1.38 | 1.38 |
| C11–C15 | 1.36 | 1.37 | 1.37 | 1.37 | 1.37 |
| C14–C15 | 1.50 | 1.51 | 1.51 | 1.50 | 1.51 |
| N19–C30 | 1.46 | 1.46 | 1.46 | 1.45 | 1.45 |
| O35–C31 | 1.39 | 1.40 | 1.42 | 1.40 | 1.42 |
| O35–C37 | 1.42 | 1.43 | 1.43 | 1.43 | 1.43 |
| O36–C31 | 1.40 | 1.43 | 1.41 | 1.43 | 1.40 |
| O36–C41 | 1.39 | 1.42 | 1.43 | 1.42 | 1.43 |
| C1–C2–C3 | 121.2 | 121.1 | 121.1 | 121.2 | 121.2 |
| C4–C5–C15 | 106.5 | 106.8 | 106.8 | 106.8 | 106.8 |
| C4–N16–C11 | 108.9 | 109.2 | 109.2 | 109.3 | 109.3 |
| C2–C3–C4 | 117.6 | 117.7 | 117.7 | 117.7 | 117.7 |
| C5–C15–C11 | 107.0 | 107.0 | 107.1 | 107.3 | 107.3 |
| C5–C15–C14 | 131.9 | 130.7 | 130.7 | 130.1 | 130.5 |
| C12–C13–C14 | 108.3 | 107.8 | 107.9 | 107.8 | 108.1 |
| N19–C30–C31 | 111.8 | 114.0 | 112.8 | 112.5 | 111.4 |
| N19–C24–C20 | 119.4 | 112.2 | 112.0 | 111.5 | 110.9 |
| C30–C31–O35 | 107.0 | 109.3 | 111.3 | 109.0 | 110.9 |
| O35–C31–O36 | 110.3 | 108.1 | 108.1 | 108.2 | 109.4 |
| C1–C2–C3–C4 | 0.3 | -0.0 | -0.1 | -0.1 | -0.3 |
| C4–C5–C6–C1 | -0.2 | 0.0 | -0.2 | 0.1 | -0.6 |
| C4–C5–C15–C11 | 0.2 | 0.1 | 0.0 | 0.5 | -0.2 |
| C5–C4–N16–C11 | 0.8 | 0.3 | 0.3 | 0.1 | 0.0 |
| N16–C4–C5–C6 | -179.0 | -179.8 | -179.6 | 179.5 | -179.5 |
| N16–C4–C5–C15 | -0.7 | -0.2 | -0.2 | -0.3 | 0.1 |
| N19–C30–C31–O35 | -67.5 | -72.9 | -63.4 | -72.1 | -58.6 |
| N19–C30–C31–O36 | 173.3 | 168.4 | 176.9 | 168.9 | -178.2 |
| C30–C31–O35–C37 | 170.1 | 170.2 | 117.2 | 168.1 | 103.2 |
| C30–C31–O36–C41 | -119.5 | -90.9 | -173.0 | -89.0 | -171.4 |
| O36–C31–O35–C37 | -71.6 | -69.8 | -125.0 | -71.1 | -138.2 |
| O35–C31–O36–C41 | 123.3 | 149.7 | 66.3 | 151.5 | 68.0 |
Available experimental data are taken from Ref. [9].
The observed and calculated vibrational frequencies (in cm−1) of the lowest energy structure (I) of the compound (7), at B3LYP/6–311++G(d,p) level in CHCl3.
| 3395 | 3505 | 109 | νNH (100) |
| 3059 | 28 | νCH R | |
| 3054 | 3050 | 49 | νasCH R |
| 3041 | 7 | νasCH R | |
| 3033 | 2 | νasCH R | |
| 3000 | 29 | νC37H (87) | |
| 2992 | 38 | νC41H (92) | |
| 2969 | 23 | νCH R | |
| 2954 | 40 | νC30H (93) | |
| 2952 | 107 | νasCH2 R | |
| 2949 | 52 | νasC37H2 (88) | |
| 2948 | 61 | νasCH2 R | |
| 2928 | 2925 | 70 | νCH2 R |
| 2918 | 64 | νCH2 R | |
| 2917 | 71 | νasC41H2 (98) | |
| 2911 | 84 | νCH2 R | |
| 2908 | 3 | νCH2 R | |
| 2882 | 72 | νC37H3 (81)+ νC37H (12) | |
| 2878 | 69 | νCH2 R | |
| 2870 | 75 | νC41H3 (90) | |
| 2831 | 2841 | 91 | νC31H (93) |
| 2818 | 91 | νC30H (92) | |
| 2782 | 149 | νCH R | |
| 1618 | 1633 | 10 | νCC R |
| 1594 | 11 | νCC R | |
| 1581 | 1574 | 11 | νCC R |
| 1512 | 4 | σCH2 R | |
| 1498 | 6 | ipb (HCC R | |
| 1484 | 12 | σ(C37H2+ C41H2) (70) | |
| 1478 | 8 | σCH2 R | |
| 1471 | 10 | σC41H2 (49) | |
| 1467 | 1465 | 42 | σCH2 R |
| 1464 | 10 | σCH2 R | |
| 1461 | 8 | σC37H2 (75)+ ρC37H2 (14) | |
| 1461 | 50 | ipb HCC R | |
| 1454 | 4 | σ (C30H2+C41H2) (77) | |
| 1423 | 1445 | 52 | ipb HCC R |
| 1406 | 9 | ω C30H2 (53) | |
| 1386 | 24 | ωCH2 R | |
| 1384 | 4 | νCC R | |
| 1368 | 1368 | 11 | ipb HCC R |
| 1347 | 3 | ωCH2 R | |
| 1331 | 1331 | 16 | ωCH2 R |
| 1308 | 1300 | 60 | τCH2 R |
| 1276 | 1281 | 22 | τC30H2 (44) |
| 1234 | 1236 | 13 | ipb HCC R |
| 1193 | 1196 | 38 | ωC41H2 (36)+ ωC37H2 (15) |
| 1159 | 2 | ρC41H2 (80)+ σC41H2 (13) | |
| 1137 | 56 | νN19C (48) | |
| 1127 | 1126 | 166 | νOC (56) |
| 1073 | 1066 | 299 | νOC (69) |
| 1012 | 1017 | 30 | νOC+ νN19C+ νCC R |
| 1002 | 1000 | 21 | ρCH2 R |
| 965 | 962 | 18 | opb HCC R |
| 930 | 948 | 141 | νOC (59) |
| 900 | 913 | 9 | α R |
| 753 | 4 | opb (HN16C + HCC R | |
| 737 | 97 | opb HCC R | |
| 432 | 1 | opb (HN16C + HCC R | |
| 384 | 42 | opb HN16C (63) | |
| 367 | 18 | opb (HN16C + COC) (33) | |
| 310 | 10 | opb HN16C (25) |
The vibrational assignments of the compound are given for the lowest energy conformer. The abbreviations are as IIR, IR intensity; ν, symmetric stretching; νas, asymmetric stretching; ω, wagging; τ, twisting; ρ, rocking; σ, scissoring; α, in-plan ring deformation; β, non-planar ring deformation; ipb, in-plane bending; opb, out-plane bending; sb, symmetric bending; χ, torsion; R, ring.
The observed and Boltzmann-averaged computed H and C NMR chemical shifts of the title compound at B3LYP/6–311++G(d,p) level of the theory.
| CHCl3 | CHCl3 | ||||||
|---|---|---|---|---|---|---|---|
| C1 | 118.7 | 125.4 | 125.2 | H7 | 7.04 | 7.3 | 7.3 |
| C2 | 119.2 | 127.2 | 126.7 | H8 | 7.04 | 7.3 | 7.3 |
| C3 | 102.2 | 114.1 | 115.4 | H9 | 7.27 | 7.3 | 7.5 |
| C4 | 136.9 | 143.4 | 144.0 | H10 | 7.64 | 7.9 | 7.9 |
| C5 | 127.9 | 134.4 | 134.8 | H17 | 8.52 | 6.9 | 7.4 |
| C6 | 110.5 | 124.6 | 124.3 | H18 | 4.27 | 3.7 | 3.8 |
| C11 | 135.3 | 137.6 | 141.0 | H21 | 2.10 | 2.0 | 2.1 |
| C12 | 28.9 | 30.7 | 30.7 | H22 | 2.31 | 2.3 | 2.4 |
| C13 | 25.1 | 29.9 | 29.7 | H23 | 1.53 | 1.6 | 1.5 |
| C14 | 53.6 | 61.5 | 61.9 | H25 | 2.31 | 2.5 | 2.5 |
| C15 | 121.5 | 127.3 | 126.7 | H27 | 2.56 | 2.9 | 2.9 |
| C20 | 32.4 | 33.2 | 33.2 | H28 | 2.31 | 2.4 | 2.5 |
| C24 | 44.7 | 50.5 | 51.5 | H29 | 1.78 | 1.6 | 1.6 |
| C26 | 33.2 | 36.6 | 36.7 | H32 | 2.63 | 3.1 | 3.1 |
| C30 | 57.9 | 68.5 | 69.3 | H33 | 2.96 | 3.0 | 3.0 |
| C31 | 106.8 | 112.5 | 113.1 | H34 | 4.63 | 4.3 | 4.4 |
| C37 | 52.6 | 56.0 | 57.0 | H38 | 3.38 | 3.5 | 3.5 |
| C41 | 53.2 | 56.5 | 57.3 | H39 | 3.38 | 3.4 | 3.5 |
| H40 | 3.38 | 3.1 | 3.1 | ||||
| H42 | 3.47 | 3.5 | 3.5 | ||||
| H43 | 3.47 | 3.5 | 3.5 | ||||
| H44 | 3.47 | 3.3 | 3.3 | ||||
| H45 | 2.31 | 2.6 | 2.5 | ||||
| H46 | 3.01 | 3.2 | 3.1 |
The NLO properties for compound (7), at B3LYP/6–311++G(d,p) level in CHCl3.
| I | II | III | IV | V | VI | |
|---|---|---|---|---|---|---|
| 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | |
| 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | |
| 3.22 | 4.04 | 3.90 | 3.56 | 5.59 | 5.54 | |
| 3.22 | 4.04 | 3.90 | 3.56 | 5.59 | 5.54 | |
| 42.91 | 42.80 | 42.78 | 42.74 | 42.85 | 42.77 | |
| 17.56 | 17.39 | 16.83 | 18.89 | 18.66 | 17.64 | |
| -4.21 | -3.71 | 1.39 | 1.30 | 2.47 | 1.10 | |
| 2.61 | 1.09 | 1.77 | 2.17 | -1.00 | -0.99 | |
| -3.55 | -4.24 | -4.77 | -4.85 | -2.74 | -3.26 | |
| 6.09 | 5.74 | 5.28 | 5.47 | 3.82 | 3.58 | |
∗The abbreviations are as μ, the static dipole moment, α; the linear polarizability, Δα, the anisotropy of the polarizability; β, the frequency independent first-order hyperpolarizability according to the x, y, x components of the coordinate system.
The quantum chemical reactivity identifiers for the compound (7), at B3LYP/6–311++G(d,p).
| Conformers | I | II | III | IV | V | VI |
|---|---|---|---|---|---|---|
| HOMO | -0.200 | -0.200 | -0.198 | -0.200 | -0.197 | -0.201 |
| LUMO | -0.018 | -0.019 | -0.016 | -0.016 | -0.015 | -0.017 |
| ΔE | 4.941 | 4.926 | 4.957 | 4.981 | 4.950 | 5.019 |
| μ | -2.958 | -2.988 | -2.916 | -2.939 | -2.894 | -2.965 |
| η | 2.471 | 2.463 | 2.478 | 2.490 | 2.475 | 2.509 |
| ω | 1.771 | 1.812 | 1.715 | 1.734 | 1.692 | 1.751 |
| ΔN | 1.197 | 1.213 | 1.176 | 1.180 | 1.169 | 1.181 |
| HOMO | -0.204 | -0.203 | -0.202 | -0.203 | -0.203 | -0.204 |
| LUMO | -0.021 | -0.021 | -0.020 | -0.020 | -0.019 | -0.020 |
| ΔE | 4.961 | 4.932 | 4.954 | 4.972 | 5.009 | 5.011 |
| μ | -3.060 | -3.049 | -3.029 | -3.043 | -3.012 | -3.049 |
| η | 2.481 | 2.466 | 2.477 | 2.486 | 2.505 | 2.505 |
| ω | 1.887 | 1.885 | 1.852 | 1.862 | 1.812 | 1.855 |
| ΔN | 1.233 | 1.236 | 1.223 | 1.224 | 1.203 | 1.217 |
∗HOMO and LUMO energies, ΔE, χ, η, ω and ΔNmax are given in eV. Abbreviations are ΔE, Energy Gap; χ, electronic chemical potential; η, global hardness; ω, electrophilicity; ΔN, max. charge transfer capability index.
Figure 2HOMO and LUMO amplitudes of the lowest energy conformer (I) for the compound (7) for both methods by using the B3LYP/6–311++G(d,p) basis set in CHCl3 (isoval:0.02).