Literature DB >> 32544447

Quo vadis microRNAs?

Bastian Fromm1, Andreas Keller2, Xiaozeng Yang3, Marc R Friedlander4, Kevin J Peterson5, Sam Griffiths-Jones6.   

Abstract

Since 2002, published miRNAs have been collected and named by the online repository miRBase. However, with 11 000 annual publications this has become challenging. Recently, four specialized miRNA databases were published, addressing particular needs for diverse scientific communities. This development provides major opportunities for the future of miRNA annotation and nomenclature.
Copyright © 2020 Elsevier Ltd. All rights reserved.

Keywords:  annotation; database; miRNAs; nomenclature; noncoding genes

Mesh：

Substances：

Year:  2020        PMID： 32544447     DOI： 10.1016/j.tig.2020.03.007

Source DB:  PubMed          Journal:  Trends Genet        ISSN： 0168-9525            Impact factor:   11.639


  9 in total

1.  Posterior cingulate cortex reveals an expression profile of resilience in cognitively intact elders.

Authors:  Christy M Kelley; Stephen D Ginsberg; Winnie S Liang; Scott E Counts; Elliott J Mufson
Journal:  Brain Commun       Date:  2022-06-21

Review 2.  Digging into bivalve miRNAomes: between conservation and innovation.

Authors:  Umberto Rosani; Enrico Bortoletto; Chang-Ming Bai; Beatriz Novoa; Antonio Figueras; Paola Venier; Bastian Fromm
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2021-04-05       Impact factor: 6.671

3.  The Construction and Exploration of a Comprehensive MicroRNA Centered Regulatory Network in Foxtail Millet (Setaria italica L.).

Authors:  Yang Deng; Haolin Zhang; Hailong Wang; Guofang Xing; Biao Lei; Zheng Kuang; Yongxin Zhao; Congcong Li; Shaojun Dai; Xiaozeng Yang; Jianhua Wei; Jiewei Zhang
Journal:  Front Plant Sci       Date:  2022-05-06       Impact factor: 5.753

4.  HumiR: Web Services, Tools and Databases for Exploring Human microRNA Data.

Authors:  Jeffrey Solomon; Fabian Kern; Tobias Fehlmann; Eckart Meese; Andreas Keller
Journal:  Biomolecules       Date:  2020-11-20

5.  CoolMPS: evaluation of antibody labeling based massively parallel non-coding RNA sequencing.

Authors:  Yongping Li; Tobias Fehlmann; Adam Borcherding; Snezana Drmanac; Sophie Liu; Laura Groeger; Chongjun Xu; Matthew Callow; Christian Villarosa; Alexander Jorjorian; Fabian Kern; Nadja Grammes; Eckart Meese; Hui Jiang; Radoje Drmanac; Nicole Ludwig; Andreas Keller
Journal:  Nucleic Acids Res       Date:  2021-01-25       Impact factor: 16.971

6.  PmiREN2.0: from data annotation to functional exploration of plant microRNAs.

Authors:  Zhonglong Guo; Zheng Kuang; Yongxin Zhao; Yang Deng; Hao He; Miaomiao Wan; Yihan Tao; Dong Wang; Jianhua Wei; Lei Li; Xiaozeng Yang
Journal:  Nucleic Acids Res       Date:  2022-01-07       Impact factor: 16.971

7.  Comprehensive Annotation and Functional Exploration of MicroRNAs in Lettuce.

Authors:  Yang Deng; Yajuan Qin; Pan Yang; Jianjun Du; Zheng Kuang; Yongxin Zhao; Ying Wang; Dayong Li; Jianhua Wei; Xinyu Guo; Lei Li; Xiaozeng Yang
Journal:  Front Plant Sci       Date:  2021-12-24       Impact factor: 5.753

8.  MirGeneDB 2.1: toward a complete sampling of all major animal phyla.

Authors:  Bastian Fromm; Eirik Høye; Diana Domanska; Xiangfu Zhong; Ernesto Aparicio-Puerta; Vladimir Ovchinnikov; Sinan U Umu; Peter J Chabot; Wenjing Kang; Morteza Aslanzadeh; Marcel Tarbier; Emilio Mármol-Sánchez; Gianvito Urgese; Morten Johansen; Eivind Hovig; Michael Hackenberg; Marc R Friedländer; Kevin J Peterson
Journal:  Nucleic Acids Res       Date:  2022-01-07       Impact factor: 19.160

9.  A curated human cellular microRNAome based on 196 primary cell types.

Authors:  Arun H Patil; Andrea Baran; Zachary P Brehm; Matthew N McCall; Marc K Halushka
Journal:  Gigascience       Date:  2022-08-25       Impact factor: 7.658
  9 in total

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