Literature DB >> 32541907

Zebrafish microbiome studies make waves.

Keaton Stagaman1, Thomas J Sharpton1,2, Karen Guillemin3,4.   

Abstract

Zebrafish have a 50-year history as a model organism for studying vertebrate developmental biology and more recently have emerged as a powerful model system for studying vertebrate microbiome assembly, dynamics and function. In this Review, we discuss the strengths of the zebrafish model for both observational and manipulative microbiome studies, and we highlight some of the important insights gleaned from zebrafish gut microbiome research.

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Year:  2020        PMID： 32541907      PMCID： PMC7755162          DOI： 10.1038/s41684-020-0573-6

Source DB:  PubMed          Journal:  Lab Anim (NY)        ISSN： 0093-7355            Impact factor:   12.625


  51 in total

Review 1.  Headwaters of the zebrafish -- emergence of a new model vertebrate.

Authors:  David Jonah Grunwald; Judith S Eisen
Journal:  Nat Rev Genet       Date:  2002-09       Impact factor: 53.242

Review 2.  Perspectives on antigen presenting cells in zebrafish.

Authors:  Kanako L Lewis; Natasha Del Cid; David Traver
Journal:  Dev Comp Immunol       Date:  2014-03-29       Impact factor: 3.636

Review 3.  The scales of the zebrafish: host-microbiota interactions from proteins to populations.

Authors:  Adam R Burns; Karen Guillemin
Journal:  Curr Opin Microbiol       Date:  2017-06-12       Impact factor: 7.934

4.  Distinct signals from the microbiota promote different aspects of zebrafish gut differentiation.

Authors:  Jennifer M Bates; Erika Mittge; Julie Kuhlman; Katrina N Baden; Sarah E Cheesman; Karen Guillemin
Journal:  Dev Biol       Date:  2006-05-11       Impact factor: 3.582

Review 5.  Best practices for germ-free derivation and gnotobiotic zebrafish husbandry.

Authors:  E Melancon; S Gomez De La Torre Canny; S Sichel; M Kelly; T J Wiles; J F Rawls; J S Eisen; K Guillemin
Journal:  Methods Cell Biol       Date:  2017       Impact factor: 1.441

6.  Gnotobiotic zebrafish reveal evolutionarily conserved responses to the gut microbiota.

Authors:  John F Rawls; Buck S Samuel; Jeffrey I Gordon
Journal:  Proc Natl Acad Sci U S A       Date:  2004-03-19       Impact factor: 11.205

7.  The composition of the zebrafish intestinal microbial community varies across development.

Authors:  W Zac Stephens; Adam R Burns; Keaton Stagaman; Sandi Wong; John F Rawls; Karen Guillemin; Brendan J M Bohannan
Journal:  ISME J       Date:  2015-09-04       Impact factor: 10.302

8.  A bacterial immunomodulatory protein with lipocalin-like domains facilitates host-bacteria mutualism in larval zebrafish.

Authors:  Annah S Rolig; Emily Goers Sweeney; Lila E Kaye; Michael D DeSantis; Arden Perkins; Allison V Banse; M Kristina Hamilton; Karen Guillemin
Journal:  Elife       Date:  2018-11-06       Impact factor: 8.140

9.  Triclosan Exposure Is Associated with Rapid Restructuring of the Microbiome in Adult Zebrafish.

Authors:  Christopher A Gaulke; Carrie L Barton; Sarah Proffitt; Robert L Tanguay; Thomas J Sharpton
Journal:  PLoS One       Date:  2016-05-18       Impact factor: 3.240

10.  A conserved bacterial protein induces pancreatic beta cell expansion during zebrafish development.

Authors:  Jennifer Hampton Hill; Eric A Franzosa; Curtis Huttenhower; Karen Guillemin
Journal:  Elife       Date:  2016-12-13       Impact factor: 8.140
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  9 in total

1.  Dietary Mannan Oligosaccharides Enhance the Non-Specific Immunity, Intestinal Health, and Resistance Capacity of Juvenile Blunt Snout Bream (Megalobrama amblycephala) Against Aeromonas hydrophila.

Authors:  Zhujin Ding; Xu Wang; Yunlong Liu; Yancui Zheng; Hongping Li; Minying Zhang; Yang He; Hanliang Cheng; Jianhe Xu; Xiangning Chen; Xiaoheng Zhao
Journal:  Front Immunol       Date:  2022-06-15       Impact factor: 8.786

2.  Genome-Resolved Characterization of Structure and Potential Functions of the Zebrafish Stool Microbiome.

Authors:  Masood Ur Rehman Kayani; Syed Shujaat Ali Zaidi; Ru Feng; Kan Yu; Yushu Qiu; Xiaogang Yu; Lei Chen; Lisu Huang
Journal:  Front Cell Infect Microbiol       Date:  2022-06-15       Impact factor: 6.073

Review 3.  Specific Pathogen Free - A review of strategies in agriculture, aquaculture, and laboratory mammals and how they inform new recommendations for laboratory zebrafish.

Authors:  Katrina N Murray; Tannia S Clark; Myron J Kebus; Michael L Kent
Journal:  Res Vet Sci       Date:  2021-11-20       Impact factor: 2.554

4.  Host-emitted amino acid cues regulate bacterial chemokinesis to enhance colonization.

Authors:  Catherine D Robinson; Emily G Sweeney; Julia Ngo; Emily Ma; Arden Perkins; T Jarrod Smith; Nicolas L Fernandez; Christopher M Waters; S James Remington; Brendan J M Bohannan; Karen Guillemin
Journal:  Cell Host Microbe       Date:  2021-07-06       Impact factor: 31.316

Review 5.  Mucosal immunoglobulins of teleost fish: A decade of advances.

Authors:  Irene Salinas; Álvaro Fernández-Montero; Yang Ding; J Oriol Sunyer
Journal:  Dev Comp Immunol       Date:  2021-03-27       Impact factor: 3.605

6.  Phylogenetic Integration Reveals the Zebrafish Core Microbiome and Its Sensitivity to Environmental Exposures.

Authors:  Thomas J Sharpton; Keaton Stagaman; Michael J Sieler; Holly K Arnold; Edward W Davis
Journal:  Toxics       Date:  2021-01-15

7.  Egg nutritional modulation with amino acids improved performance in zebrafish larvae.

Authors:  Carmen Navarro-Guillén; Gabriella do Vale Pereira; André Lopes; Rita Colen; Sofia Engrola
Journal:  PLoS One       Date:  2021-04-09       Impact factor: 3.240

8.  Short chain fatty acids (SCFAs) improves TNBS-induced colitis in zebrafish.

Authors:  Camila Morales Fénero; Mariana Abrantes Amaral; Izabella Karina Xavier; Barbara Nunes Padovani; Lais Cavalieri Paredes; Tatiana Takiishi; Mônica Lopes-Ferreira; Carla Lima; Alicia Colombo; Niels Olsen Saraiva Câmara
Journal:  Curr Res Immunol       Date:  2021-08-31

9.  Experimental methods modestly impact interpretation of the effect of environmental exposures on the larval zebrafish gut microbiome.

Authors:  Keaton Stagaman; Kristin D Kasschau; Robyn L Tanguay; Thomas J Sharpton
Journal:  Sci Rep       Date:  2022-08-25       Impact factor: 4.996
  9 in total

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