Literature DB >> 32535713

Identification of Core Genes and Pathways in Medulloblastoma by Integrated Bioinformatics Analysis.

Yuduo Guo1, Peng Huang1, Hongwei Zhang2, Chunjiang Yu3, Weihai Ning1.   

Abstract

Medulloblastoma (MB) is one of the most common intracranial malignancies in children. The present study applied integrated bioinformatics to identify potential core genes associated with the pathogenesis of MB and reveal potential molecular mechanisms. Through the integrated analysis of multiple data sets from the Gene Expression Omnibus (GEO), 414 differentially expressed genes (DEGs) were identified. Combining the protein-protein interaction (PPI) network analysis with gene set enrichment analysis (GSEA), eight core genes, including CCNA2, CCNB1, CCNB2, AURKA, CDK1, MAD2L1, BUB1B, and RRM2, as well as four core pathways, including "cell cycle", "oocyte meiosis", "p53 pathway" and "DNA replication" were selected. In independent data sets, the core genes showed superior diagnostic values and significant prognostic correlations. Moreover, in the pan-caner data of the cancer genome atlas (TCGA), the core genes were also widely abnormally expressed. In conclusion, this study identified core genes and pathways of MB through integrated analysis to deepen the understanding of the molecular mechanisms underlying the MB and provide potential targets and pathways for diagnosis and treatment of MB.

Entities:  

Keywords:  Bioinformatics analysis; Differentially expressed genes; GEO; Medulloblastoma; Pathways; TCGA

Mesh:

Year:  2020        PMID: 32535713     DOI: 10.1007/s12031-020-01556-1

Source DB:  PubMed          Journal:  J Mol Neurosci        ISSN: 0895-8696            Impact factor:   3.444


  46 in total

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Review 2.  Recent developments and current concepts in medulloblastoma.

Authors:  N U Gerber; M Mynarek; K von Hoff; C Friedrich; A Resch; S Rutkowski
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Journal:  Cancer Sci       Date:  2009-12-04       Impact factor: 6.716

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Authors:  Diane K Birks; Andrew M Donson; Purvi R Patel; Alexandra Sufit; Elizabeth M Algar; Christopher Dunham; B K Kleinschmidt-DeMasters; Michael H Handler; Rajeev Vibhakar; Nicholas K Foreman
Journal:  Pediatr Blood Cancer       Date:  2013-02-04       Impact factor: 3.167

5.  Differential expression and prognostic significance of SOX genes in pediatric medulloblastoma and ependymoma identified by microarray analysis.

Authors:  Judith M de Bont; Johan M Kros; Monique M C J Passier; Roel E Reddingius; Peter A E Sillevis Smitt; Theo M Luider; Monique L den Boer; Rob Pieters
Journal:  Neuro Oncol       Date:  2008-06-24       Impact factor: 12.300

6.  The checkpoint protein MAD2 and the mitotic regulator CDC20 form a ternary complex with the anaphase-promoting complex to control anaphase initiation.

Authors:  G Fang; H Yu; M W Kirschner
Journal:  Genes Dev       Date:  1998-06-15       Impact factor: 11.361

7.  Cyclin F-mediated degradation of ribonucleotide reductase M2 controls genome integrity and DNA repair.

Authors:  Vincenzo D'Angiolella; Valerio Donato; Frances M Forrester; Yeon-Tae Jeong; Claudia Pellacani; Yasusei Kudo; Anita Saraf; Laurence Florens; Michael P Washburn; Michele Pagano
Journal:  Cell       Date:  2012-05-25       Impact factor: 41.582

8.  Low MAD2 expression levels associate with reduced progression-free survival in patients with high-grade serous epithelial ovarian cancer.

Authors:  Fiona Furlong; Patricia Fitzpatrick; Sharon O'Toole; Sine Phelan; Barbara McGrogan; Aoife Maguire; Anthony O'Grady; Michael Gallagher; Maria Prencipe; Aloysius McGoldrick; Paul McGettigan; Donal Brennan; Orla Sheils; Cara Martin; Elaine W Kay; John O'Leary; Amanda McCann
Journal:  J Pathol       Date:  2012-01-17       Impact factor: 7.996

9.  Sp1 contributes to radioresistance of cervical cancer through targeting G2/M cell cycle checkpoint CDK1.

Authors:  Yuan-Run Deng; Xiao-Jing Chen; Wei Chen; Lan-Fang Wu; Hui-Ping Jiang; Dan Lin; Li-Jing Wang; Wei Wang; Sui-Qun Guo
Journal:  Cancer Manag Res       Date:  2019-06-28       Impact factor: 3.989

10.  Increased expression of BubR1 protects against aneuploidy and cancer and extends healthy lifespan.

Authors:  Darren J Baker; Meelad M Dawlaty; Tobias Wijshake; Karthik B Jeganathan; Liviu Malureanu; Janine H van Ree; Ruben Crespo-Diaz; Santiago Reyes; Lauren Seaburg; Virginia Shapiro; Atta Behfar; Andre Terzic; Bart van de Sluis; Jan M van Deursen
Journal:  Nat Cell Biol       Date:  2012-12-16       Impact factor: 28.824

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  5 in total

1.  Identification of Regeneration and Hub Genes and Pathways at Different Time Points after Spinal Cord Injury.

Authors:  Sheng Fang; An-Quan Wang; Lin Zhong; Hui Zhang; Zong-Sheng Yin
Journal:  Mol Neurobiol       Date:  2021-01-23       Impact factor: 5.590

2.  Identification of ITPR1 as a Hub Gene of Group 3 Medulloblastoma and Coregulated Genes with Potential Prognostic Values.

Authors:  Pablo Ferreira das Chagas; Graziella Ribeiro de Sousa; Luciana Chain Veronez; Andrea Martins-da-Silva; Carolina Alves Pereira Corrêa; Gustavo Alencastro Veiga Cruzeiro; Luis Fernando Peinado Nagano; Rosane Gomes de Paula Queiroz; Suely Kazue Nagahashi Marie; Silvia Regina Brandalise; Carlos Alberto Scrideli; Luiz Gonzaga Tone; Elvis Terci Valera
Journal:  J Mol Neurosci       Date:  2021-11-25       Impact factor: 3.444

3.  Identification of Key Genes Associated With the Process of Hepatitis B Inflammation and Cancer Transformation by Integrated Bioinformatics Analysis.

Authors:  Jingyuan Zhang; Xinkui Liu; Wei Zhou; Shan Lu; Chao Wu; Zhishan Wu; Runping Liu; Xiaojiaoyang Li; Jiarui Wu; Yingying Liu; Siyu Guo; Shanshan Jia; Xiaomeng Zhang; Miaomiao Wang
Journal:  Front Genet       Date:  2021-09-01       Impact factor: 4.599

4.  Identification of Potential Key Genes and Molecular Mechanisms of Medulloblastoma Based on Integrated Bioinformatics Approach.

Authors:  Md Rakibul Islam; Lway Faisal Abdulrazak; Mohammad Khursheed Alam; Bikash Kumar Paul; Kawsar Ahmed; Francis M Bui; Mohammad Ali Moni
Journal:  Biomed Res Int       Date:  2022-01-04       Impact factor: 3.411

5.  The Predictive Competing Endogenous RNA Regulatory Networks and Potential Prognostic and Immunological Roles of Cyclin A2 in Pan-Cancer Analysis.

Authors:  Shenyong Chen; Zhijia Zhao; Xiaobo Wang; Qi Zhang; Li Lyu; Bo Tang
Journal:  Front Mol Biosci       Date:  2022-04-11
  5 in total

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