| Literature DB >> 32533120 |
Zubin Mishra1, Anushika Ganegoda1, Jane Selicha1, Ziyuan Wang1,2, SriniVas R Sadda1,2, Zhihong Hu3.
Abstract
Regular drusen, an accumulation of material below the retinal pigment epithelium (RPE), have long been established as a hallmark early feature of nonneovascular age-related macular degeneration (AMD). Advances in imaging have expanded the phenotype of AMD to include another extracellular deposit, reticular pseudodrusen (RPD) (also termed subretinal drusenoid deposits, SDD), which are located above the RPE. We developed an approach to automatically segment retinal layers associated with regular drusen and RPD in spectral domain (SD) optical coherence tomography (OCT) images. More specifically, a shortest-path algorithm enhanced with probability maps generated through a fully convolutional neural network was used to segment drusen and RPD, as well as 11 retinal layers in SD-OCT volumes. This algorithm achieves a mean difference that is within the subpixel accuracy range drusen and RPD, alongside the other 11 retinal layers, highlighting the high robustness of this algorithm for this dataset. To the best of our knowledge, this is the first report of a validated algorithm for the automated segmentation of the retinal layers including early AMD features of RPD and regular drusen separately on SD-OCT images.Entities:
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Year: 2020 PMID: 32533120 PMCID: PMC7293300 DOI: 10.1038/s41598-020-66355-5
Source DB: PubMed Journal: Sci Rep ISSN: 2045-2322 Impact factor: 4.379
Figure 1Overview of the DL-SP approach for segmentation of retinal layers, where orange boxes represent training steps and gray boxes represent evaluation steps. There was no overlap between training and testing data.
Figure 2Results of the deep learning fully convolutional neural network, from which probability maps for the boundaries between layers can be calculated. (a) shows the original B-scan. (b) visualizes the layer assignment generated by the neural network.
Figure 3Segmentation of drusen, RPD, and eleven retinal layers on SD-OCT B-scans. (a,d,g) are the original B-scans for the segmentations shown in (c,f,h) respectively. The drusen segmentation shown in (c) arises from the deep learning probability map shown in (b) and the RPD segmentation shown in (f) arises from the deep learning probability map shown in (e) The layers in order from top to bottom are the ILM, NF-GC, GC-IP, IP-IN, IN-OP, OP-ON, ELM, IS-OS, RPD, inner RPE, drusen, outer RPE, and C-S.
Mean and absolute mean border position differences of the automated and manual segmentations on a 1:1 probability map to gradient weighting scheme (512 2D B-scans).
| Layers | Mean (pixels) | Mean (μm) | Absolute Mean (pixels) | Absolute Mean (μm) |
|---|---|---|---|---|
| ILM | −0.70 ± 0.95 | −2.74 ± 3.68 | 0.89 ± 0.78 | 3.45 ± 3.03 |
| OP-ON | −0.59 ± 2.71 | −2.29 ± 10.53 | 1.67 ± 2.21 | 6.49 ± 8.60 |
| ELM | −0.47 ± 2.66 | −1.81 ± 10.37 | 2.02 ± 1.80 | 7.84 ± 7.02 |
| IS-OS | −0.60 ± 1.25 | −2.34 ± 4.87 | 1.01 ± 0.95 | 3.92 ± 3.72 |
| Inner RPE | −0.58 ± 1.88 | −2.27 ± 7.31 | 1.42 ± 1.36 | 5.53 ± 5.29 |
| Outer RPE | 0.02 ± 1.84 | 0.07 ± 7.16 | 1.14 ± 1.44 | 4.44 ± 5.62 |
| C-S | −0.12 ± 13.37 | −0.48 ± 52.04 | 9.31 ± 9.60 | 36.22 ± 37.37 |
| Drusen | −0.41 ± 1.97 | −1.58 ± 7.66 | 1.30 ± 1.53 | 5.05 ± 5.97 |
| RPD | −0.75 ± 1.99 | −2.92 ± 7.74 | 1.53 ± 1.47 | 5.97 ± 5.74 |
Mean and absolute mean border position differences of the automated and manual segmentations based only on gradient (512 2D B-scans).
| Layers | Mean (pixels) | Mean (μm) | Absolute Mean (pixels) | Absolute Mean (μm) |
|---|---|---|---|---|
| ILM | 0.96 ± 3.74 | 3.72 ± 14.54 | 1.17 ± 3.68 | 4.56 ± 14.30 |
| OP-ON | 4.87 ± 8.37 | 18.96 ± 32.55 | 5.49 ± 7.98 | 21.36 ± 31.04 |
| ELM | 3.14 ± 3.27 | 12.24 ± 12.72 | 3.39 ± 3.01 | 13.19 ± 11.72 |
| IS-OS | 0.31 ± 1.97 | 1.21 ± 7.66 | 1.14 ± 1.63 | 4.44 ± 6.35 |
| Inner RPE | 1.01 ± 3.15 | 3.94 ± 12.27 | 2.68 ± 1.95 | 10.43 ± 7.58 |
| Outer RPE | 0.93 ± 3.17 | 3.62 ± 12.32 | 1.98 ± 2.64 | 7.71 ± 10.28 |
| C-S | −12.69 ± 21.34 | −49.39 ± 83.03 | 17.59 ± 17.52 | 68.46 ± 68.16 |
| Drusen | 0.79 ± 3.17 | 3.07 ± 12.32 | 2.10 ± 2.50 | 8.17 ± 9.73 |
| RPD | 1.02 ± 3.25 | 3.96 ± 12.64 | 2.76 ± 1.99 | 10.75 ± 7.74 |
Mean and absolute mean border position differences of the automated and manual segmentations on 2:1 probability map to gradient weighting scheme (512 2D B-scans).
| Layers | Mean (pixels) | Mean (μm) | Absolute Mean (pixels) | Absolute Mean (μm) |
|---|---|---|---|---|
| ILM | −0.75 ± 0.95 | −2.91 ± 3.68 | 0.92 ± 0.78 | 3.56 ± 3.05 |
| OP-ON | −0.61 ± 2.66 | −2.38 ± 10.36 | 1.66 ± 2.17 | 6.47 ± 8.44 |
| ELM | −0.46 ± 2.66 | −1.78 ± 10.37 | 2.01 ± 1.81 | 7.83 ± 7.02 |
| IS-OS | −0.62 ± 1.25 | −2.42 ± 4.88 | 1.02 ± 0.96 | 3.98 ± 3.72 |
| Inner RPE | −0.60 ± 1.88 | −2.33 ± 7.31 | 1.43 ± 1.36 | 5.56 ± 5.29 |
| Outer RPE | 0.02 ± 2.00 | 0.07 ± 7.79 | 1.15 ± 1.63 | 4.49 ± 6.36 |
| C-S | −0.09 ± 13.36 | −0.34 ± 51.97 | 9.31 ± 9.58 | 36.23 ± 37.27 |
| Drusen | −0.42 ± 1.98 | −1.63 ± 7.69 | 1.30 ± 1.54 | 5.08 ± 6.00 |
| RPD | −0.77 ± 1.99 | −3.00 ± 7.73 | 1.54 ± 1.47 | 5.99 ± 5.73 |
Mean and absolute mean border position differences of the automated and manual segmentations based only on probability map (512 2D B-scans).
| Layers | Mean (pixels) | Mean (μm) | Absolute Mean (pixels) | Absolute Mean (μm) |
|---|---|---|---|---|
| ILM | −0.79 ± 0.95 | −3.07 ± 3.68 | 0.95 ± 0.79 | 3.68 ± 3.07 |
| OP-ON | −0.65 ± 2.74 | −2.52 ± 10.66 | 1.68 ± 2.26 | 6.54 ± 8.78 |
| ELM | −0.49 ± 2.93 | −1.90 ± 11.42 | 2.05 ± 2.16 | 7.97 ± 8.40 |
| IS-OS | −0.67 ± 1.90 | −2.61 ± 7.39 | 1.09 ± 1.69 | 4.26 ± 6.58 |
| Inner RPE | −0.61 ± 1.90 | −2.38 ± 7.40 | 1.44 ± 1.38 | 5.61 ± 5.38 |
| Outer RPE | 0.00 ± 1.83 | −0.01 ± 7.13 | 1.15 ± 1.43 | 4.47 ± 5.56 |
| C-S | 0.76 ± 12.25 | 2.94 ± 47.68 | 9.23 ± 8.09 | 35.93 ± 31.48 |
| Drusen | −0.43 ± 1.98 | −1.69 ± 7.70 | 1.31 ± 1.54 | 5.10 ± 6.00 |
| RPD | −0.79 ± 2.01 | −3.07 ± 7.82 | 1.56 ± 1.50 | 6.05 ± 5.82 |
Mean and absolute mean border position differences of the automated and manual segmentations on 1:2 probability map to gradient weighting scheme (512 2D B-scans).
| Layers | Mean (pixels) | Mean (μm) | Absolute Mean (pixels) | Absolute Mean (μm) |
|---|---|---|---|---|
| ILM | −0.62 ± 0.95 | −2.39 ± 3.69 | 0.83 ± 0.76 | 3.25 ± 2.97 |
| OP-ON | −0.54 ± 2.77 | −2.11 ± 10.79 | 1.67 ± 2.28 | 6.51 ± 8.86 |
| ELM | −0.48 ± 2.66 | −1.88 ± 10.36 | 2.02 ± 1.80 | 7.87 ± 7.00 |
| IS-OS | −0.56 ± 1.25 | −2.19 ± 4.85 | 0.98 ± 0.95 | 3.83 ± 3.70 |
| Inner RPE | −0.56 ± 1.92 | −2.20 ± 7.47 | 1.44 ± 1.39 | 5.60 ± 5.40 |
| Outer RPE | 0.06 ± 1.79 | 0.21 ± 6.96 | 1.14 ± 1.38 | 4.42 ± 5.38 |
| C-Sv | −0.13 ± 13.39 | −0.51 ± 52.12 | 9.32 ± 9.62 | 36.27 ± 37.43 |
| Drusen | −0.37 ± 1.93 | −1.45 ± 7.51 | 1.29 ± 1.49 | 5.00 ± 5.79 |
| RPD | −0.73 ± 2.03 | −2.84 ± 7.90 | 1.55 ± 1.50 | 6.03 ± 5.84 |