Literature DB >> 32532595

Single-Cell Genomics and Epigenomics: Technologies and Applications in Plants.

Cheng Luo1, Alisdair R Fernie2, Jianbing Yan3.   

Abstract

The development of genomics and epigenomics has allowed rapid advances in our understanding of plant biology. However, conventional bulk analysis dilutes cell-specific information by providing only average information, thereby limiting the resolution of genomic and functional genomic studies. Recent advances in single-cell sequencing technology concerning genomics and epigenomics open new avenues to dissect cell heterogeneity in multiple biological processes. Recent applications of these approaches to plants have provided exciting insights into diverse biological questions. We highlight the methodologies underlying the current techniques of single-cell genomics and epigenomics before covering their recent applications, potential significance, and future perspectives in plant biology.
Copyright © 2020 Elsevier Ltd. All rights reserved.

Keywords:  epigenomic information; genomic variations; single-cell sequencing; whole genome amplification

Mesh:

Year:  2020        PMID: 32532595     DOI: 10.1016/j.tplants.2020.04.016

Source DB:  PubMed          Journal:  Trends Plant Sci        ISSN: 1360-1385            Impact factor:   18.313


  11 in total

Review 1.  Advancing crop genomics from lab to field.

Authors:  Michael D Purugganan; Scott A Jackson
Journal:  Nat Genet       Date:  2021-05-06       Impact factor: 38.330

Review 2.  Plant multiscale networks: charting plant connectivity by multi-level analysis and imaging techniques.

Authors:  Xi Zhang; Yi Man; Xiaohong Zhuang; Jinbo Shen; Yi Zhang; Yaning Cui; Meng Yu; Jingjing Xing; Guangchao Wang; Na Lian; Zijian Hu; Lingyu Ma; Weiwei Shen; Shunyao Yang; Huimin Xu; Jiahui Bian; Yanping Jing; Xiaojuan Li; Ruili Li; Tonglin Mao; Yuling Jiao; Haiyun Ren; Jinxing Lin
Journal:  Sci China Life Sci       Date:  2021-03-12       Impact factor: 6.038

3.  Using precision phenotyping to inform de novo domestication.

Authors:  Alisdair R Fernie; Saleh Alseekh; Jie Liu; Jianbing Yan
Journal:  Plant Physiol       Date:  2021-07-06       Impact factor: 8.340

Review 4.  Potentials of single-cell genomics in deciphering cellular phenotypes.

Authors:  Abbas Shojaee; Michelle Saavedra; Shao-Shan Carol Huang
Journal:  Curr Opin Plant Biol       Date:  2021-06-08       Impact factor: 9.396

5.  Sustainable agriculture in the era of omics: knowledge-driven crop breeding.

Authors:  Qing Li; Jianbing Yan
Journal:  Genome Biol       Date:  2020-06-26       Impact factor: 13.583

6.  FlsnRNA-seq: protoplasting-free full-length single-nucleus RNA profiling in plants.

Authors:  Yanping Long; Zhijian Liu; Jinbu Jia; Weipeng Mo; Liang Fang; Dongdong Lu; Bo Liu; Hong Zhang; Wei Chen; Jixian Zhai
Journal:  Genome Biol       Date:  2021-02-19       Impact factor: 13.583

Review 7.  Current State and Future Directions of Genetics and Genomics of Endophytic Fungi for Bioprospecting Efforts.

Authors:  Rosa Sagita; Wim J Quax; Kristina Haslinger
Journal:  Front Bioeng Biotechnol       Date:  2021-03-15

Review 8.  Plant Single-Cell Metabolomics-Challenges and Perspectives.

Authors:  Leonardo Perez de Souza; Monica Borghi; Alisdair Fernie
Journal:  Int J Mol Sci       Date:  2020-11-26       Impact factor: 5.923

9.  Protoplast Dissociation and Transcriptome Analysis Provides Insights to Salt Stress Response in Cotton.

Authors:  Qiankun Liu; Pengtao Li; Shuang Cheng; Zilin Zhao; Yuling Liu; Yangyang Wei; Quanwei Lu; Jiangping Han; Xiaoyan Cai; Zhongli Zhou; Muhammad Jawad Umer; Renhai Peng; Baohong Zhang; Fang Liu
Journal:  Int J Mol Sci       Date:  2022-03-05       Impact factor: 5.923

10.  Development of a single-cell atlas for woodland strawberry (Fragaria vesca) leaves during early Botrytis cinerea infection using single cell RNA-seq.

Authors:  Yibo Bai; Hui Liu; Haimeng Lyu; Liyao Su; Jinsong Xiong; Zong-Ming Max Cheng
Journal:  Hortic Res       Date:  2022-01-19       Impact factor: 6.793

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