Literature DB >> 32529824

Rapid Elaboration of Fragments into Leads by X-ray Crystallographic Screening of Parallel Chemical Libraries (REFiLX).

Matthew R Bentley1, Olga V Ilyichova1, Geqing Wang2, Martin L Williams1, Gaurav Sharma1, Wesam S Alwan1, Rebecca L Whitehouse1, Biswaranjan Mohanty1,3, Peter J Scammells1, Begoña Heras2, Jennifer L Martin4,5, Makrina Totsika6, Ben Capuano1,3, Bradley C Doak1,3,7, Martin J Scanlon1,3,7.   

Abstract

A bottleneck in fragment-based lead development is the lack of systematic approaches to elaborate the initial fragment hits, which usually bind with low affinity to their target. Herein, we describe an analysis using X-ray crystallography of a diverse library of compounds prepared using microscale parallel synthesis. This approach yielded an 8-fold increase in affinity and detailed structural information for the resulting complex, providing an efficient and broadly applicable approach to early fragment development.

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Year:  2020        PMID: 32529824     DOI: 10.1021/acs.jmedchem.0c00111

Source DB:  PubMed          Journal:  J Med Chem        ISSN: 0022-2623            Impact factor:   7.446


  6 in total

1.  Synthesis and direct assay of large macrocycle diversities by combinatorial late-stage modification at picomole scale.

Authors:  Sevan Habeshian; Manuel Leonardo Merz; Gontran Sangouard; Ganesh Kumar Mothukuri; Mischa Schüttel; Zsolt Bognár; Cristina Díaz-Perlas; Jonathan Vesin; Julien Bortoli Chapalay; Gerardo Turcatti; Laura Cendron; Alessandro Angelini; Christian Heinis
Journal:  Nat Commun       Date:  2022-07-02       Impact factor: 17.694

Review 2.  Fragment-to-Lead Medicinal Chemistry Publications in 2020.

Authors:  Iwan J P de Esch; Daniel A Erlanson; Wolfgang Jahnke; Christopher N Johnson; Louise Walsh
Journal:  J Med Chem       Date:  2021-12-20       Impact factor: 7.446

3.  Selective Binding of Small Molecules to Vibrio cholerae DsbA Offers a Starting Point for the Design of Novel Antibacterials.

Authors:  Geqing Wang; Biswaranjan Mohanty; Martin L Williams; Bradley C Doak; Rabeb Dhouib; Makrina Totsika; Róisín M McMahon; Gaurav Sharma; Dan Zheng; Matthew R Bentley; Yanni Ka-Yan Chin; James Horne; David K Chalmers; Begoña Heras; Martin J Scanlon
Journal:  ChemMedChem       Date:  2022-01-27       Impact factor: 3.540

4.  Therapeutic and prognostic potential of GPCRs in prostate cancer from multi-omics landscape.

Authors:  Shiqi Li; Jianfang Chen; Xin Chen; Jin Yu; Yanzhi Guo; Menglong Li; Xuemei Pu
Journal:  Front Pharmacol       Date:  2022-08-30       Impact factor: 5.988

Review 5.  Structural bioinformatic analysis of DsbA proteins and their pathogenicity associated substrates.

Authors:  Carlos Santos-Martin; Geqing Wang; Pramod Subedi; Lilian Hor; Makrina Totsika; Jason John Paxman; Begoña Heras
Journal:  Comput Struct Biotechnol J       Date:  2021-08-14       Impact factor: 7.271

6.  Frag4Lead: growing crystallographic fragment hits by catalog using fragment-guided template docking.

Authors:  Alexander Metz; Jan Wollenhaupt; Steffen Glöckner; Niki Messini; Simon Huber; Tatjana Barthel; Ahmed Merabet; Hans Dieter Gerber; Andreas Heine; Gerhard Klebe; Manfred S Weiss
Journal:  Acta Crystallogr D Struct Biol       Date:  2021-08-23       Impact factor: 7.652

  6 in total

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