Literature DB >> 32527725

Mechanistic insights into the dual activities of the single active site of l-lysine oxidase/monooxygenase from Pseudomonas sp. AIU 813.

Duangthip Trisrivirat1,2, Narin Lawan3, Pirom Chenprakhon4, Daisuke Matsui5,6, Yasuhisa Asano5, Pimchai Chaiyen7,2.   

Abstract

l-Lysine oxidase/monooxygenase (l-LOX/MOG) from Pseudomonas sp. AIU 813 catalyzes the mixed bioconversion of l-amino acids, particularly l-lysine, yielding an amide and carbon dioxide by an oxidative decarboxylation (i.e. apparent monooxygenation), as well as oxidative deamination (hydrolysis of oxidized product), resulting in α-keto acid, hydrogen peroxide (H2O2), and ammonia. Here, using high-resolution MS and monitoring transient reaction kinetics with stopped-flow spectrophotometry, we identified the products from the reactions of l-lysine and l-ornithine, indicating that besides decarboxylating imino acids (i.e. 5-aminopentanamide from l-lysine), l-LOX/MOG also decarboxylates keto acids (5-aminopentanoic acid from l-lysine and 4-aminobutanoic acid from l-ornithine). The reaction of reduced enzyme and oxygen generated an imino acid and H2O2, with no detectable C4a-hydroperoxyflavin. Single-turnover reactions in which l-LOX/MOG was first reduced by l-lysine to form imino acid before mixing with various compounds revealed that under anaerobic conditions, only hydrolysis products are present. Similar results were obtained upon H2O2 addition after enzyme denaturation. H2O2 addition to active l-LOX/MOG resulted in formation of more 5-aminopentanoic acid, but not 5-aminopentamide, suggesting that H2O2 generated from l-LOX/MOG in situ can result in decarboxylation of the imino acid, yielding an amide product, and extra H2O2 resulted in decarboxylation only of keto acids. Molecular dynamics simulations and detection of charge transfer species suggested that interactions between the substrate and its binding site on l-LOX/MOG are important for imino acid decarboxylation. Structural analysis indicated that the flavoenzyme oxidases catalyzing decarboxylation of an imino acid all share a common plug loop configuration that may facilitate this decarboxylation.
© 2020 Trisrivirat et al.

Entities:  

Keywords:  5-aminopentanamide; decarboxylation; dual activity enzyme; flavin adenine dinucleotide (FAD); flavin enzyme mechanism; flavin-dependent monooxygenase; flavin-dependent oxidase; flavoprotein; imino acid; keto acid; l-amino acid monooxygenase; l-amino acid oxidase; monooxygenase; oxidase

Mesh:

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Year:  2020        PMID: 32527725      PMCID: PMC7415961          DOI: 10.1074/jbc.RA120.014055

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  67 in total

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3.  Cloning, characterization and expression of escapin, a broadly antimicrobial FAD-containing L-amino acid oxidase from ink of the sea hare Aplysia californica.

Authors:  Hsiuchin Yang; Paul Micah Johnson; Ko-Chun Ko; Michiya Kamio; Markus W Germann; Charles D Derby; Phang C Tai
Journal:  J Exp Biol       Date:  2005-09       Impact factor: 3.312

4.  Kinetic Mechanism of the Dechlorinating Flavin-dependent Monooxygenase HadA.

Authors:  Panu Pimviriyakul; Kittisak Thotsaporn; Jeerus Sucharitakul; Pimchai Chaiyen
Journal:  J Biol Chem       Date:  2017-02-03       Impact factor: 5.157

5.  On the mechanism of D-amino acid oxidase. Structure/linear free energy correlations and deuterium kinetic isotope effects using substituted phenylglycines.

Authors:  L Pollegioni; W Blodig; S Ghisla
Journal:  J Biol Chem       Date:  1997-02-21       Impact factor: 5.157

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Authors:  Pimchai Chaiyen; Marco W Fraaije; Andrea Mattevi
Journal:  Trends Biochem Sci       Date:  2012-07-20       Impact factor: 13.807

7.  Studies on the catalytic mechanism of lactate oxidase. Formation of enantiomeric flavin-N(5)-glycollyl adducts via carbanion intermediates.

Authors:  S Ghisla; V Massey
Journal:  J Biol Chem       Date:  1980-06-25       Impact factor: 5.157

8.  ORF7 from Amycolatopsis orientalis catalyzes decarboxylation of Nδ-methylarginine and amine oxidation of arginine: Biosynthetic implications.

Authors:  Natalie L Kingston; Yun Liu; Christopher T Calderone
Journal:  Biochim Biophys Acta Proteins Proteom       Date:  2016-09-29       Impact factor: 3.036

9.  Structure of the flavoprotein tryptophan 2-monooxygenase, a key enzyme in the formation of galls in plants.

Authors:  Helena M Gaweska; Alexander B Taylor; P John Hart; Paul F Fitzpatrick
Journal:  Biochemistry       Date:  2013-04-04       Impact factor: 3.162

10.  Identification of Tyr413 as an active site residue in the flavoprotein tryptophan 2-monooxygenase and analysis of its contribution to catalysis.

Authors:  Pablo Sobrado; Paul F Fitzpatrick
Journal:  Biochemistry       Date:  2003-12-02       Impact factor: 3.162

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