| Literature DB >> 32523766 |
Sergey P Gavrish1, Sergiu Shova2, Maria Cazacu2, Yaroslaw D Lampeka1.
Abstract
The asymmetric unit of the title compound, catena-poly[[[(1,4,8,11-tetra-aza-cyclo-tetra-decane-κ4 N 1,Entities:
Keywords: coordination polymers; crystal structure; cyclam; hydrogen bonds; macrocyclic ligand; nickel
Year: 2020 PMID: 32523766 PMCID: PMC7274011 DOI: 10.1107/S2056989020006544
Source DB: PubMed Journal: Acta Crystallogr E Crystallogr Commun
Figure 1The extended asymmetric unit in I showing the coordination environment of the Ni atoms and the atom-labelling scheme (displacement ellipsoids are drawn at the 40% probability level). The atoms obtained by symmetry transformations are shown with 50% transparency. C-bound H atoms are omitted for clarity. Dashed lines represent hydrogen-bonding interactions. [Symmetry codes: (i) −x + , −y + , −z; (ii) −x + 1, y, −z + ].
Selected bond lengths and angles (Å, °)
| Distances | Bite angles | ||
|---|---|---|---|
| Ni1—N1 | 2.066 (3) | N1—Ni1—N2 | 86.05 (13) |
| Ni1—N2 | 2.068 (3) | N1—Ni1—N2i | 93.95 (13) |
| Ni1—O1 | 2.128 (2) |
Symmetry code: (i) −x + , −y + , −z.
Figure 2Comparison of the conformations of diphenylsilanediylbis(4-benzoic acid) and its anions. (a) C2-symmetric structures. H: dark-green – XOZVIT; A: red – I (current work), blue – ZIGXEV-1, yellow – XOQXIL-1. (b) Asymmetric structures. HA: light-green – XOZWAM; A: lilac – ZIGXIZ-1, pink – ZIGXIZ-2, orange – XOQXIL-2. Numbers accompanying refcodes refer to two structurally non-equivalent anions in a given compound. The disordered symmetric anion in ZIGXEV-2 is not shown.
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| N1—H1⋯O2 | 0.98 | 2.02 | 2.916 (4) | 151 |
| O1 | 0.85 | 2.05 | 2.850 (5) | 156 |
| O1 | 0.85 | 1.89 | 2.744 (5) | 177 |
Symmetry code: (i) .
Figure 3The structure of the polymeric chain in I. C-bound H atoms are omitted for clarity.
Figure 4The packing in I viewed down the [101] direction with polymeric chains cross-linked by O2⋯H—O1W—H⋯O2 hydrogen bonds (dotted lines) to form a three-dimensional supramolecular network. C-bound H atoms are omitted for clarity.
Experimental details
| Crystal data | |
| Chemical formula | [Ni(C26H18O4Si)(C10H24N4)]·1.5H2O |
|
| 1417.11 |
| Crystal system, space group | Monoclinic, |
| Temperature (K) | 200 |
|
| 25.390 (4), 7.3865 (10), 18.2424 (16) |
| β (°) | 98.161 (10) |
|
| 3386.6 (8) |
|
| 2 |
| Radiation type | Mo |
| μ (mm−1) | 0.66 |
| Crystal size (mm) | 0.35 × 0.10 × 0.10 |
| Data collection | |
| Diffractometer | Agilent Xcalibur, Eos |
| Absorption correction | Multi-scan ( |
|
| 0.964, 1.000 |
| No. of measured, independent and observed [ | 7999, 3926, 2512 |
|
| 0.052 |
| (sin θ/λ)max (Å−1) | 0.693 |
| Refinement | |
|
| 0.066, 0.147, 1.03 |
| No. of reflections | 3926 |
| No. of parameters | 219 |
| H-atom treatment | H-atom parameters constrained |
| Δρmax, Δρmin (e Å−3) | 0.51, −0.51 |
Computer programs: CrysAlis PRO (Agilent, 2014 ▸), SHELXT (Sheldrick, 2015a ▸), SHELXL2018/3 (Sheldrick, 2015b ▸), OLEX2 (Dolomanov et al., 2009 ▸) and publCIF (Westrip, 2010 ▸).
| [Ni(C26H18O4Si)(C10H24N4)]·1.5H2O | |
| Monoclinic, | Mo |
| Cell parameters from 1577 reflections | |
| θ = 2.6–29.5° | |
| µ = 0.66 mm−1 | |
| β = 98.161 (10)° | |
| Prism, clear light yellow | |
| 0.35 × 0.10 × 0.10 mm |
| Agilent Xcalibur, Eos diffractometer | 3926 independent reflections |
| Radiation source: Enhance (Mo) X-ray Source | 2512 reflections with |
| Graphite monochromator | |
| Detector resolution: 16.1593 pixels mm-1 | θmax = 29.5°, θmin = 2.6° |
| ω scans | |
| Absorption correction: multi-scan (CrysAlisPro; Agilent, 2014), | |
| 7999 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Hydrogen site location: mixed |
| H-atom parameters constrained | |
| (Δ/σ)max < 0.001 | |
| 3926 reflections | Δρmax = 0.51 e Å−3 |
| 219 parameters | Δρmin = −0.51 e Å−3 |
| 0 restraints |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Occ. (<1) | |||||
| Ni1 | 0.250000 | 0.250000 | 0.000000 | 0.0273 (2) | |
| Si1 | 0.500000 | 0.95105 (19) | 0.250000 | 0.0256 (3) | |
| O1 | 0.30989 (10) | 0.3756 (4) | 0.07669 (14) | 0.0372 (7) | |
| O2 | 0.27252 (11) | 0.4301 (4) | 0.17836 (15) | 0.0514 (8) | |
| N1 | 0.19897 (12) | 0.2120 (5) | 0.07732 (17) | 0.0377 (8) | |
| H1 | 0.214580 | 0.275668 | 0.122344 | 0.045* | |
| N2 | 0.27921 (12) | −0.0047 (4) | 0.03013 (18) | 0.0381 (8) | |
| H2 | 0.262042 | −0.087426 | −0.007954 | 0.046* | |
| C1 | 0.20090 (17) | 0.0146 (6) | 0.0952 (2) | 0.0464 (11) | |
| H1A | 0.177654 | −0.051687 | 0.057721 | 0.056* | |
| H1B | 0.188941 | −0.005714 | 0.142697 | 0.056* | |
| C2 | 0.25790 (17) | −0.0508 (6) | 0.0976 (2) | 0.0480 (11) | |
| H2A | 0.279912 | 0.003615 | 0.139702 | 0.058* | |
| H2B | 0.259044 | −0.181115 | 0.104319 | 0.058* | |
| C3 | 0.33655 (17) | −0.0306 (6) | 0.0316 (2) | 0.0490 (12) | |
| H3A | 0.345186 | −0.156556 | 0.042523 | 0.059* | |
| H3B | 0.355364 | 0.042076 | 0.071235 | 0.059* | |
| C4 | 0.14439 (17) | 0.4804 (6) | 0.0397 (2) | 0.0477 (11) | |
| H4A | 0.108246 | 0.524309 | 0.038067 | 0.057* | |
| H4B | 0.166204 | 0.543620 | 0.079585 | 0.057* | |
| C5 | 0.14505 (15) | 0.2795 (6) | 0.0585 (2) | 0.0435 (11) | |
| H5A | 0.125675 | 0.260021 | 0.100024 | 0.052* | |
| H5B | 0.127171 | 0.212343 | 0.016526 | 0.052* | |
| C6 | 0.30912 (15) | 0.4468 (5) | 0.1389 (2) | 0.0319 (9) | |
| C7 | 0.35609 (14) | 0.5657 (5) | 0.16868 (18) | 0.0247 (8) | |
| C8 | 0.40442 (14) | 0.5475 (5) | 0.14241 (19) | 0.0312 (9) | |
| H8 | 0.408530 | 0.458487 | 0.107630 | 0.037* | |
| C9 | 0.44678 (14) | 0.6610 (5) | 0.1675 (2) | 0.0329 (9) | |
| H9 | 0.479200 | 0.644164 | 0.150332 | 0.039* | |
| C10 | 0.44174 (14) | 0.8002 (5) | 0.21810 (18) | 0.0264 (8) | |
| C11 | 0.39244 (14) | 0.8183 (5) | 0.24315 (18) | 0.0296 (8) | |
| H11 | 0.387380 | 0.911020 | 0.275947 | 0.035* | |
| C12 | 0.35091 (14) | 0.7001 (5) | 0.21976 (19) | 0.0309 (9) | |
| H12 | 0.319013 | 0.711608 | 0.238874 | 0.037* | |
| C13 | 0.51508 (14) | 1.1037 (5) | 0.1735 (2) | 0.0285 (8) | |
| C14 | 0.55319 (15) | 1.2399 (5) | 0.1896 (2) | 0.0371 (9) | |
| H14 | 0.571043 | 1.249604 | 0.237641 | 0.044* | |
| C15 | 0.56512 (17) | 1.3597 (6) | 0.1370 (2) | 0.0466 (11) | |
| H15 | 0.590586 | 1.449113 | 0.149517 | 0.056* | |
| C16 | 0.53943 (17) | 1.3472 (6) | 0.0658 (2) | 0.0458 (11) | |
| H16 | 0.547953 | 1.426763 | 0.029713 | 0.055* | |
| C17 | 0.50098 (17) | 1.2169 (6) | 0.0477 (2) | 0.0464 (11) | |
| H17 | 0.483033 | 1.210014 | −0.000366 | 0.056* | |
| C18 | 0.48907 (15) | 1.0964 (5) | 0.1009 (2) | 0.0361 (9) | |
| H18 | 0.463175 | 1.008505 | 0.088027 | 0.043* | |
| O1W | 0.19429 (16) | 0.6528 (6) | 0.2165 (2) | 0.0640 (12) | 0.75 |
| H1WA | 0.205149 | 0.708674 | 0.256534 | 0.096* | 0.75 |
| H1WB | 0.218579 | 0.582004 | 0.206074 | 0.096* | 0.75 |
| Ni1 | 0.0236 (4) | 0.0255 (4) | 0.0312 (4) | −0.0020 (3) | −0.0015 (3) | −0.0022 (3) |
| Si1 | 0.0214 (7) | 0.0242 (7) | 0.0295 (7) | 0.000 | −0.0019 (6) | 0.000 |
| O1 | 0.0313 (15) | 0.0442 (17) | 0.0345 (14) | −0.0102 (13) | −0.0009 (11) | −0.0133 (14) |
| O2 | 0.0425 (19) | 0.065 (2) | 0.0492 (17) | −0.0234 (16) | 0.0151 (14) | −0.0184 (16) |
| N1 | 0.0339 (19) | 0.043 (2) | 0.0352 (18) | −0.0042 (16) | 0.0013 (14) | −0.0049 (16) |
| N2 | 0.035 (2) | 0.0298 (18) | 0.047 (2) | 0.0013 (15) | −0.0039 (15) | 0.0018 (17) |
| C1 | 0.046 (3) | 0.039 (2) | 0.054 (3) | −0.011 (2) | 0.005 (2) | 0.004 (2) |
| C2 | 0.052 (3) | 0.041 (3) | 0.051 (3) | 0.008 (2) | 0.006 (2) | 0.016 (2) |
| C3 | 0.040 (3) | 0.046 (3) | 0.060 (3) | 0.016 (2) | 0.003 (2) | 0.002 (2) |
| C4 | 0.037 (3) | 0.050 (3) | 0.053 (3) | 0.004 (2) | −0.001 (2) | −0.004 (2) |
| C5 | 0.028 (2) | 0.059 (3) | 0.044 (2) | −0.002 (2) | 0.0067 (18) | −0.009 (2) |
| C6 | 0.032 (2) | 0.025 (2) | 0.036 (2) | −0.0021 (17) | −0.0012 (17) | 0.0018 (18) |
| C7 | 0.0252 (19) | 0.0228 (18) | 0.0245 (18) | −0.0011 (15) | −0.0023 (14) | 0.0033 (16) |
| C8 | 0.033 (2) | 0.028 (2) | 0.031 (2) | 0.0018 (17) | −0.0005 (16) | −0.0102 (17) |
| C9 | 0.021 (2) | 0.033 (2) | 0.043 (2) | −0.0005 (17) | 0.0023 (16) | −0.0034 (19) |
| C10 | 0.0216 (19) | 0.0271 (19) | 0.0277 (18) | 0.0005 (15) | −0.0060 (14) | 0.0048 (16) |
| C11 | 0.030 (2) | 0.034 (2) | 0.0238 (18) | −0.0023 (17) | −0.0003 (15) | −0.0045 (17) |
| C12 | 0.0223 (19) | 0.039 (2) | 0.0311 (19) | −0.0028 (17) | 0.0026 (15) | −0.0015 (18) |
| C13 | 0.024 (2) | 0.0255 (19) | 0.036 (2) | 0.0017 (16) | 0.0037 (15) | 0.0035 (18) |
| C14 | 0.038 (2) | 0.032 (2) | 0.040 (2) | −0.0025 (19) | 0.0004 (17) | 0.002 (2) |
| C15 | 0.041 (3) | 0.032 (2) | 0.067 (3) | −0.005 (2) | 0.008 (2) | 0.004 (2) |
| C16 | 0.046 (3) | 0.039 (3) | 0.054 (3) | 0.011 (2) | 0.015 (2) | 0.017 (2) |
| C17 | 0.049 (3) | 0.053 (3) | 0.036 (2) | 0.010 (2) | 0.0020 (19) | 0.008 (2) |
| C18 | 0.028 (2) | 0.038 (2) | 0.040 (2) | −0.0006 (18) | −0.0031 (17) | 0.003 (2) |
| O1W | 0.050 (3) | 0.070 (3) | 0.072 (3) | 0.000 (2) | 0.009 (2) | −0.012 (3) |
| Ni1—O1i | 2.128 (2) | C4—C5 | 1.523 (6) |
| Ni1—O1 | 2.128 (2) | C5—H5A | 0.9700 |
| Ni1—N1 | 2.066 (3) | C5—H5B | 0.9700 |
| Ni1—N1i | 2.065 (3) | C6—C7 | 1.518 (5) |
| Ni1—N2i | 2.068 (3) | C7—C8 | 1.386 (5) |
| Ni1—N2 | 2.068 (3) | C7—C12 | 1.381 (5) |
| Si1—C10ii | 1.878 (4) | C8—H8 | 0.9300 |
| Si1—C10 | 1.878 (4) | C8—C9 | 1.389 (5) |
| Si1—C13ii | 1.875 (4) | C9—H9 | 0.9300 |
| Si1—C13 | 1.875 (4) | C9—C10 | 1.399 (5) |
| O1—C6 | 1.254 (4) | C10—C11 | 1.399 (5) |
| O2—C6 | 1.260 (4) | C11—H11 | 0.9300 |
| N1—H1 | 0.9800 | C11—C12 | 1.389 (5) |
| N1—C1 | 1.493 (5) | C12—H12 | 0.9300 |
| N1—C5 | 1.452 (5) | C13—C14 | 1.398 (5) |
| N2—H2 | 0.9800 | C13—C18 | 1.395 (5) |
| N2—C2 | 1.455 (5) | C14—H14 | 0.9300 |
| N2—C3 | 1.465 (5) | C14—C15 | 1.371 (5) |
| C1—H1A | 0.9700 | C15—H15 | 0.9300 |
| C1—H1B | 0.9700 | C15—C16 | 1.372 (6) |
| C1—C2 | 1.520 (5) | C16—H16 | 0.9300 |
| C2—H2A | 0.9700 | C16—C17 | 1.377 (6) |
| C2—H2B | 0.9700 | C17—H17 | 0.9300 |
| C3—H3A | 0.9700 | C17—C18 | 1.382 (5) |
| C3—H3B | 0.9700 | C18—H18 | 0.9300 |
| C3—C4i | 1.497 (6) | O1W—H1WA | 0.8499 |
| C4—H4A | 0.9700 | O1W—H1WB | 0.8504 |
| C4—H4B | 0.9700 | ||
| O1—Ni1—O1i | 180.0 | C3i—C4—H4A | 108.2 |
| N1i—Ni1—O1i | 93.98 (11) | C3i—C4—H4B | 108.2 |
| N1i—Ni1—O1 | 86.02 (11) | C3i—C4—C5 | 116.3 (4) |
| N1—Ni1—O1 | 93.98 (11) | H4A—C4—H4B | 107.4 |
| N1—Ni1—O1i | 86.02 (11) | C5—C4—H4A | 108.2 |
| N1i—Ni1—N1 | 180.0 | C5—C4—H4B | 108.2 |
| N1—Ni1—N2i | 93.95 (13) | N1—C5—C4 | 111.6 (3) |
| N1—Ni1—N2 | 86.05 (13) | N1—C5—H5A | 109.3 |
| N1i—Ni1—N2 | 93.95 (13) | N1—C5—H5B | 109.3 |
| N1i—Ni1—N2i | 86.05 (13) | C4—C5—H5A | 109.3 |
| N2—Ni1—O1i | 88.51 (11) | C4—C5—H5B | 109.3 |
| N2—Ni1—O1 | 91.49 (11) | H5A—C5—H5B | 108.0 |
| N2i—Ni1—O1 | 88.51 (11) | O1—C6—O2 | 125.7 (3) |
| N2i—Ni1—O1i | 91.49 (11) | O1—C6—C7 | 117.0 (3) |
| N2—Ni1—N2i | 180.0 | O2—C6—C7 | 117.3 (3) |
| C10—Si1—C10ii | 107.2 (2) | C8—C7—C6 | 120.6 (3) |
| C13ii—Si1—C10ii | 111.20 (15) | C12—C7—C6 | 120.8 (3) |
| C13—Si1—C10 | 111.20 (15) | C12—C7—C8 | 118.5 (3) |
| C13ii—Si1—C10 | 110.63 (16) | C7—C8—H8 | 119.7 |
| C13—Si1—C10ii | 110.63 (16) | C7—C8—C9 | 120.7 (3) |
| C13—Si1—C13ii | 106.1 (2) | C9—C8—H8 | 119.7 |
| C6—O1—Ni1 | 132.6 (2) | C8—C9—H9 | 119.3 |
| Ni1—N1—H1 | 106.8 | C8—C9—C10 | 121.4 (3) |
| C1—N1—Ni1 | 106.1 (2) | C10—C9—H9 | 119.3 |
| C1—N1—H1 | 106.8 | C9—C10—Si1 | 119.9 (3) |
| C5—N1—Ni1 | 117.0 (3) | C11—C10—Si1 | 123.0 (3) |
| C5—N1—H1 | 106.8 | C11—C10—C9 | 117.1 (3) |
| C5—N1—C1 | 112.8 (3) | C10—C11—H11 | 119.5 |
| Ni1—N2—H2 | 105.8 | C12—C11—C10 | 121.0 (3) |
| C2—N2—Ni1 | 106.0 (2) | C12—C11—H11 | 119.5 |
| C2—N2—H2 | 105.8 | C7—C12—C11 | 121.2 (3) |
| C2—N2—C3 | 116.2 (3) | C7—C12—H12 | 119.4 |
| C3—N2—Ni1 | 116.2 (3) | C11—C12—H12 | 119.4 |
| C3—N2—H2 | 105.8 | C14—C13—Si1 | 119.0 (3) |
| N1—C1—H1A | 110.0 | C18—C13—Si1 | 124.3 (3) |
| N1—C1—H1B | 110.0 | C18—C13—C14 | 116.6 (3) |
| N1—C1—C2 | 108.6 (3) | C13—C14—H14 | 118.9 |
| H1A—C1—H1B | 108.4 | C15—C14—C13 | 122.2 (4) |
| C2—C1—H1A | 110.0 | C15—C14—H14 | 118.9 |
| C2—C1—H1B | 110.0 | C14—C15—H15 | 120.1 |
| N2—C2—C1 | 111.6 (3) | C14—C15—C16 | 119.8 (4) |
| N2—C2—H2A | 109.3 | C16—C15—H15 | 120.1 |
| N2—C2—H2B | 109.3 | C15—C16—H16 | 120.0 |
| C1—C2—H2A | 109.3 | C15—C16—C17 | 120.0 (4) |
| C1—C2—H2B | 109.3 | C17—C16—H16 | 120.0 |
| H2A—C2—H2B | 108.0 | C16—C17—H17 | 120.0 |
| N2—C3—H3A | 108.9 | C16—C17—C18 | 120.0 (4) |
| N2—C3—H3B | 108.9 | C18—C17—H17 | 120.0 |
| N2—C3—C4i | 113.2 (3) | C13—C18—H18 | 119.3 |
| H3A—C3—H3B | 107.7 | C17—C18—C13 | 121.4 (4) |
| C4i—C3—H3A | 108.9 | C17—C18—H18 | 119.3 |
| C4i—C3—H3B | 108.9 | H1WA—O1W—H1WB | 109.5 |
| Ni1—O1—C6—O2 | 14.6 (6) | C8—C9—C10—Si1 | −179.6 (3) |
| Ni1—O1—C6—C7 | −164.5 (2) | C8—C9—C10—C11 | 0.9 (5) |
| Ni1—N1—C1—C2 | 38.6 (4) | C9—C10—C11—C12 | 1.4 (5) |
| Ni1—N1—C5—C4 | −55.8 (4) | C10ii—Si1—C10—C9 | −51.0 (3) |
| Ni1—N2—C2—C1 | 38.2 (4) | C10ii—Si1—C10—C11 | 128.4 (3) |
| Ni1—N2—C3—C4i | −54.2 (4) | C10ii—Si1—C13—C14 | −68.5 (3) |
| Si1—C10—C11—C12 | −178.0 (3) | C10—Si1—C13—C14 | 172.6 (3) |
| Si1—C13—C14—C15 | −178.1 (3) | C10ii—Si1—C13—C18 | 114.3 (3) |
| Si1—C13—C18—C17 | 177.9 (3) | C10—Si1—C13—C18 | −4.6 (4) |
| O1—C6—C7—C8 | −21.4 (5) | C10—C11—C12—C7 | −2.8 (5) |
| O1—C6—C7—C12 | 155.4 (3) | C12—C7—C8—C9 | 0.6 (5) |
| O2—C6—C7—C8 | 159.4 (4) | C13ii—Si1—C10—C9 | −172.4 (3) |
| O2—C6—C7—C12 | −23.9 (5) | C13—Si1—C10—C9 | 70.0 (3) |
| N1—C1—C2—N2 | −53.4 (4) | C13ii—Si1—C10—C11 | 7.0 (3) |
| C1—N1—C5—C4 | −179.3 (3) | C13—Si1—C10—C11 | −110.6 (3) |
| C2—N2—C3—C4i | 180.0 (4) | C13ii—Si1—C13—C14 | 52.2 (3) |
| C3—N2—C2—C1 | 169.0 (3) | C13ii—Si1—C13—C18 | −125.0 (4) |
| C3i—C4—C5—N1 | 70.1 (5) | C13—C14—C15—C16 | −0.3 (6) |
| C5—N1—C1—C2 | 168.0 (3) | C14—C13—C18—C17 | 0.6 (6) |
| C6—C7—C8—C9 | 177.4 (3) | C14—C15—C16—C17 | 1.3 (6) |
| C6—C7—C12—C11 | −175.1 (3) | C15—C16—C17—C18 | −1.3 (6) |
| C7—C8—C9—C10 | −2.0 (5) | C16—C17—C18—C13 | 0.3 (6) |
| C8—C7—C12—C11 | 1.8 (5) | C18—C13—C14—C15 | −0.7 (6) |
| H··· | ||||
| N1—H1···O2 | 0.98 | 2.02 | 2.916 (4) | 151 |
| O1 | 0.85 | 2.05 | 2.850 (5) | 156 |
| O1 | 0.85 | 1.89 | 2.744 (5) | 177 |