Literature DB >> 32521241

A Roadmap for Understanding the Evolutionary Significance of Structural Genomic Variation.

Claire Mérot1, Rebekah A Oomen2, Anna Tigano3, Maren Wellenreuther4.   

Abstract

Structural genomic variants (SVs) are ubiquitous and play a major role in adaptation and speciation. Yet, comparative and population genomics have focused predominantly on gene duplications and large-effect inversions. The lack of a common framework for studying all SVs is hampering progress towards a more systematic assessment of their evolutionary significance. Here we (i) review how different types of SVs affect ecological and evolutionary processes; (ii) suggest unifying definitions and recommendations for future studies; and (iii) provide a roadmap for the integration of SVs in ecoevolutionary studies. In doing so, we lay the foundation for population genomics, theoretical, and experimental approaches to understand how the full spectrum of SVs impacts ecological and evolutionary processes.
Copyright © 2020 Elsevier Ltd. All rights reserved.

Keywords:  adaptation; chromosomal rearrangements; copy number variants; duplications; inversions; population genomics; speciation

Year:  2020        PMID: 32521241     DOI: 10.1016/j.tree.2020.03.002

Source DB:  PubMed          Journal:  Trends Ecol Evol        ISSN: 0169-5347            Impact factor:   17.712


  32 in total

1.  Mutation load at a mimicry supergene sheds new light on the evolution of inversion polymorphisms.

Authors:  Paul Jay; Mathieu Chouteau; Annabel Whibley; Héloïse Bastide; Hugues Parrinello; Violaine Llaurens; Mathieu Joron
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Review 2.  Conservation and divergence in gene regulation between mouse and human immune cells deserves equal emphasis.

Authors:  Sarah E Gilbertson; Amy S Weinmann
Journal:  Trends Immunol       Date:  2021-11-02       Impact factor: 16.687

3.  Genomic structural variants constrain and facilitate adaptation in natural populations of Theobroma cacao, the chocolate tree.

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Journal:  Proc Natl Acad Sci U S A       Date:  2021-08-31       Impact factor: 11.205

4.  Association mapping of colour variation in a butterfly provides evidence that a supergene locks together a cluster of adaptive loci.

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Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2022-06-13       Impact factor: 6.671

Review 5.  Inside the supergene of the bird with four sexes.

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6.  Evolution at two time frames: ancient structural variants involved in post-glacial divergence of the European plaice (Pleuronectes platessa).

Authors:  Alan Le Moan; Dorte Bekkevold; Jakob Hemmer-Hansen
Journal:  Heredity (Edinb)       Date:  2021-02-02       Impact factor: 3.821

7.  Chromosome-Level Assembly of the Atlantic Silverside Genome Reveals Extreme Levels of Sequence Diversity and Structural Genetic Variation.

Authors:  Anna Tigano; Arne Jacobs; Aryn P Wilder; Ankita Nand; Ye Zhan; Job Dekker; Nina Overgaard Therkildsen
Journal:  Genome Biol Evol       Date:  2021-06-08       Impact factor: 3.416

8.  Extensive genome-wide duplications in the eastern oyster (Crassostrea virginica).

Authors:  Tejashree H Modak; Robert Literman; Jonathan B Puritz; Kevin M Johnson; Erin M Roberts; Dina Proestou; Ximing Guo; Marta Gomez-Chiarri; Rachel S Schwartz
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2021-04-05       Impact factor: 6.671

9.  Expanding the conservation genomics toolbox: Incorporating structural variants to enhance genomic studies for species of conservation concern.

Authors:  Jana Wold; Klaus-Peter Koepfli; Stephanie J Galla; David Eccles; Carolyn J Hogg; Marissa F Le Lec; Joseph Guhlin; Anna W Santure; Tammy E Steeves
Journal:  Mol Ecol       Date:  2021-09-12       Impact factor: 6.622

10.  A chromosome-anchored genome assembly for Lake Trout (Salvelinus namaycush).

Authors:  Seth R Smith; Eric Normandeau; Haig Djambazian; Pubudu M Nawarathna; Pierre Berube; Andrew M Muir; Jiannis Ragoussis; Chantelle M Penney; Kim T Scribner; Gordon Luikart; Chris C Wilson; Louis Bernatchez
Journal:  Mol Ecol Resour       Date:  2021-08-14       Impact factor: 8.678

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