Literature DB >> 32519624

Automated outbreak detection of hospital-associated pathogens: Value to infection prevention programs.

Meghan A Baker1,2, Deborah S Yokoe3, John Stelling2, Ken Kleinman4, Rebecca E Kaganov1, Alyssa R Letourneau2, Neha Varma1, Thomas O'Brien2, Martin Kulldorff2, Damilola Babalola2, Craig Barrett5, Marci Drees6, Micaela H Coady1, Amanda Isaacs1, Richard Platt1, Susan S Huang7.   

Abstract

OBJECTIVE: To assess the utility of an automated, statistically-based outbreak detection system to identify clusters of hospital-acquired microorganisms.
DESIGN: Multicenter retrospective cohort study.
SETTING: The study included 43 hospitals using a common infection prevention surveillance system.
METHODS: A space-time permutation scan statistic was applied to hospital microbiology, admission, discharge, and transfer data to identify clustering of microorganisms within hospital locations and services. Infection preventionists were asked to rate the importance of each cluster. A convenience sample of 10 hospitals also provided information about clusters previously identified through their usual surveillance methods.
RESULTS: We identified 230 clusters in 43 hospitals involving Gram-positive and -negative bacteria and fungi. Half of the clusters progressed after initial detection, suggesting that early detection could trigger interventions to curtail further spread. Infection preventionists reported that they would have wanted to be alerted about 81% of these clusters. Factors associated with clusters judged to be moderately or highly concerning included high statistical significance, large size, and clusters involving Clostridioides difficile or multidrug-resistant organisms. Based on comparison data provided by the convenience sample of hospitals, only 9 (18%) of 51 clusters detected by usual surveillance met statistical significance, and of the 70 clusters not previously detected, 58 (83%) involved organisms not routinely targeted by the hospitals' surveillance programs. All infection prevention programs felt that an automated outbreak detection tool would improve their ability to detect outbreaks and streamline their work.
CONCLUSIONS: Automated, statistically-based outbreak detection can increase the consistency, scope, and comprehensiveness of detecting hospital-associated transmission.

Entities:  

Mesh:

Year:  2020        PMID: 32519624      PMCID: PMC9451926          DOI: 10.1017/ice.2020.233

Source DB:  PubMed          Journal:  Infect Control Hosp Epidemiol        ISSN: 0899-823X            Impact factor:   6.520


  9 in total

1.  A generalized linear mixed models approach for detecting incident clusters of disease in small areas, with an application to biological terrorism.

Authors:  Ken Kleinman; Ross Lazarus; Richard Platt
Journal:  Am J Epidemiol       Date:  2004-02-01       Impact factor: 4.897

2.  Surveillance of antimicrobial resistance: the WHONET program.

Authors:  J M Stelling; T F O'Brien
Journal:  Clin Infect Dis       Date:  1997-01       Impact factor: 9.079

3.  Automated detection of infectious disease outbreaks in hospitals: a retrospective cohort study.

Authors:  Susan S Huang; Deborah S Yokoe; John Stelling; Hilary Placzek; Martin Kulldorff; Ken Kleinman; Thomas F O'Brien; Michael S Calderwood; Johanna Vostok; Julie Dunn; Richard Platt
Journal:  PLoS Med       Date:  2010-02-23       Impact factor: 11.069

4.  Lack of Comprehensive Outbreak Detection in Hospitals.

Authors:  Meghan A Baker; Susan S Huang; Alyssa R Letourneau; Rebecca E Kaganov; Jennifer R Peeples; Marci Drees; Richard Platt; Deborah S Yokoe
Journal:  Infect Control Hosp Epidemiol       Date:  2016-04       Impact factor: 3.254

5.  Evaluating cluster alarms: a space-time scan statistic and brain cancer in Los Alamos, New Mexico.

Authors:  M Kulldorff; W F Athas; E J Feurer; B A Miller; C R Key
Journal:  Am J Public Health       Date:  1998-09       Impact factor: 9.308

6.  Automated DNA sequence-based early warning system for the detection of methicillin-resistant Staphylococcus aureus outbreaks.

Authors:  Alexander Mellmann; Alexander W Friedrich; Nicole Rosenkötter; Jörg Rothgänger; Helge Karch; Ralf Reintjes; Dag Harmsen
Journal:  PLoS Med       Date:  2006-03       Impact factor: 11.069

7.  A space-time permutation scan statistic for disease outbreak detection.

Authors:  Martin Kulldorff; Richard Heffernan; Jessica Hartman; Renato Assunção; Farzad Mostashari
Journal:  PLoS Med       Date:  2005-02-15       Impact factor: 11.069

8.  Daily Reportable Disease Spatiotemporal Cluster Detection, New York City, New York, USA, 2014-2015.

Authors:  Sharon K Greene; Eric R Peterson; Deborah Kapell; Annie D Fine; Martin Kulldorff
Journal:  Emerg Infect Dis       Date:  2016-10       Impact factor: 6.883

9.  Use of WHONET-SaTScan system for simulated real-time detection of antimicrobial resistance clusters in a hospital in Italy, 2012 to 2014.

Authors:  Alessandra Natale; John Stelling; Marcello Meledandri; Louisa A Messenger; Fortunato D'Ancona
Journal:  Euro Surveill       Date:  2017-03-16
  9 in total
  1 in total

Review 1.  Digital microbiology.

Authors:  A Egli; J Schrenzel; G Greub
Journal:  Clin Microbiol Infect       Date:  2020-06-27       Impact factor: 8.067

  1 in total

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