Literature DB >> 32513720

Cotranslational folding cooperativity of contiguous domains of α-spectrin.

Grant Kemp1, Ola B Nilsson1,2, Pengfei Tian3, Robert B Best4, Gunnar von Heijne5,6.   

Abstract

Proteins synthesized in the cell can begin to fold during translation before the entire polypeptide has been produced, which may be particularly relevant to the folding of multidomain proteins. Here, we study the cotranslational folding of adjacent domains from the cytoskeletal protein α-spectrin using force profile analysis (FPA). Specifically, we investigate how the cotranslational folding behavior of the R15 and R16 domains are affected by their neighboring R14 and R16, and R15 and R17 domains, respectively. Our results show that the domains impact each other's folding in distinct ways that may be important for the efficient assembly of α-spectrin, and may reduce its dependence on chaperones. Furthermore, we directly relate the experimentally observed yield of full-length protein in the FPA assay to the force exerted by the folding protein in piconewtons. By combining pulse-chase experiments to measure the rate at which the arrested protein is converted into full-length protein with a Bell model of force-induced rupture, we estimate that the R16 domain exerts a maximal force on the nascent chain of ∼15 pN during cotranslational folding.

Entities:  

Keywords:  SecM; molecular dynamics; protein folding; spectrin; translational arrest peptide

Year:  2020        PMID: 32513720      PMCID: PMC7322005          DOI: 10.1073/pnas.1909683117

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  51 in total

1.  Translocon "pulling" of nascent SecM controls the duration of its translational pause and secretion-responsive secA regulation.

Authors:  Martha E Butkus; Lucia B Prundeanu; Donald B Oliver
Journal:  J Bacteriol       Date:  2003-11       Impact factor: 3.490

2.  New scenarios of protein folding can occur on the ribosome.

Authors:  Edward P O'Brien; John Christodoulou; Michele Vendruscolo; Christopher M Dobson
Journal:  J Am Chem Soc       Date:  2011-01-04       Impact factor: 15.419

3.  Cooperative folding in a multi-domain protein.

Authors:  Sarah Batey; Lucy G Randles; Annette Steward; Jane Clarke
Journal:  J Mol Biol       Date:  2005-06-24       Impact factor: 5.469

4.  Thermal stabilities of brain spectrin and the constituent repeats of subunits.

Authors:  Xiuli An; Xihui Zhang; Marcela Salomao; Xinhua Guo; Yang Yang; Yu Wu; Walter Gratzer; Anthony J Baines; Narla Mohandas
Journal:  Biochemistry       Date:  2006-11-14       Impact factor: 3.162

5.  Single molecule force spectroscopy of spectrin repeats: low unfolding forces in helix bundles.

Authors:  M Rief; J Pascual; M Saraste; H E Gaub
Journal:  J Mol Biol       Date:  1999-02-19       Impact factor: 5.469

6.  Domain topology, stability, and translation speed determine mechanical force generation on the ribosome.

Authors:  Sarah E Leininger; Fabio Trovato; Daniel A Nissley; Edward P O'Brien
Journal:  Proc Natl Acad Sci U S A       Date:  2019-03-01       Impact factor: 11.205

7.  Force-Profile Analysis of the Cotranslational Folding of HemK and Filamin Domains: Comparison of Biochemical and Biophysical Folding Assays.

Authors:  Grant Kemp; Renuka Kudva; Andrés de la Rosa; Gunnar von Heijne
Journal:  J Mol Biol       Date:  2019-02-07       Impact factor: 5.469

Review 8.  Spectrin-based skeleton as an actor in cell signaling.

Authors:  B Machnicka; R Grochowalska; D M Bogusławska; A F Sikorski; M C Lecomte
Journal:  Cell Mol Life Sci       Date:  2011-08-30       Impact factor: 9.261

9.  Charge-driven dynamics of nascent-chain movement through the SecYEG translocon.

Authors:  Nurzian Ismail; Rickard Hedman; Martin Lindén; Gunnar von Heijne
Journal:  Nat Struct Mol Biol       Date:  2015-01-05       Impact factor: 15.369

10.  The folding of a family of three-helix bundle proteins: spectrin R15 has a robust folding nucleus, unlike its homologous neighbours.

Authors:  Lee Gyan Kwa; Beth G Wensley; Crispin G Alexander; Stuart J Browning; Benjamin R Lichman; Jane Clarke
Journal:  J Mol Biol       Date:  2013-12-24       Impact factor: 5.469

View more
  8 in total

1.  Slowest-first protein translation scheme: Structural asymmetry and co-translational folding.

Authors:  John M McBride; Tsvi Tlusty
Journal:  Biophys J       Date:  2021-11-20       Impact factor: 4.033

2.  Cotranslational folding and assembly of the dimeric Escherichia coli inner membrane protein EmrE.

Authors:  Daphne Mermans; Felix Nicolaus; Klara Fleisch; Gunnar von Heijne
Journal:  Proc Natl Acad Sci U S A       Date:  2022-08-22       Impact factor: 12.779

3.  Folding and Evolution of a Repeat Protein on the Ribosome.

Authors:  José Alberto León-González; Perline Flatet; María Soledad Juárez-Ramírez; José Arcadio Farías-Rico
Journal:  Front Mol Biosci       Date:  2022-05-30

4.  Co-translational folding of nascent polypeptides: Multi-layered mechanisms for the efficient biogenesis of functional proteins.

Authors:  Kevin Maciuba; Nandakumar Rajasekaran; Xiuqi Chen; Christian M Kaiser
Journal:  Bioessays       Date:  2021-05-13       Impact factor: 4.653

5.  Residue-by-residue analysis of cotranslational membrane protein integration in vivo.

Authors:  Felix Nicolaus; Ane Metola; Daphne Mermans; Amanda Liljenström; Ajda Krč; Salmo Mohammed Abdullahi; Matthew Zimmer; Thomas F Miller Iii; Gunnar von Heijne
Journal:  Elife       Date:  2021-02-08       Impact factor: 8.140

6.  The ribosome modulates folding inside the ribosomal exit tunnel.

Authors:  Florian Wruck; Pengfei Tian; Renuka Kudva; Robert B Best; Gunnar von Heijne; Sander J Tans; Alexandros Katranidis
Journal:  Commun Biol       Date:  2021-05-05

7.  A switch from α-helical to β-strand conformation during co-translational protein folding.

Authors:  Xabier Agirrezabala; Ekaterina Samatova; Meline Macher; Marija Liutkute; Manisankar Maiti; David Gil-Carton; Jiri Novacek; Mikel Valle; Marina V Rodnina
Journal:  EMBO J       Date:  2022-01-07       Impact factor: 14.012

8.  Gradual compaction of the nascent peptide during cotranslational folding on the ribosome.

Authors:  Marija Liutkute; Manisankar Maiti; Ekaterina Samatova; Jörg Enderlein; Marina V Rodnina
Journal:  Elife       Date:  2020-10-27       Impact factor: 8.140

  8 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.