Literature DB >> 32511500

Understanding Spatial Heterogeneity of COVID-19 Pandemic Using Shape Analysis of Growth Rate Curves.

Anuj Srivastava, Gerardo Chowell.   

Abstract

The growth rates of COVID-19 across different geographical regions (e.g., states in a nation, countries in a continent) follow different shapes and patterns. The overall summaries at coarser spatial scales that are obtained by simply averaging individual curves (across regions) obscure nuanced variability and blurs the spatial heterogeneity at finer spatial scales. We employ statistical methods to analyze shapes of local COVID-19 growth rate curves and statistically group them into distinct clusters, according to their shapes. Using this information, we derive the so-called elastic averages of curves within these clusters, which correspond to the dominant incidence patterns. We apply this methodology to the analysis of the daily incidence trajectory of the COVID-pandemic at two spatial scales: A state-level analysis within the USA and a country-level analysis within Europe during mid-February to mid-May, 2020. Our analyses reveal a few dominant incidence trajectories that characterize transmission dynamics across states in the USA and across countries in Europe. This approach results in broad classifications of spatial areas into different trajectories and adds to the methodological toolkit for guiding public health decision making at different spatial scales.

Entities:  

Year:  2020        PMID: 32511500      PMCID: PMC7273268          DOI: 10.1101/2020.05.25.20112433

Source DB:  PubMed          Journal:  medRxiv


  7 in total

1.  Shape Analysis of Elastic Curves in Euclidean Spaces.

Authors:  Anuj Srivastava; Eric Klassen; Shantanu H Joshi; Ian H Jermyn
Journal:  IEEE Trans Pattern Anal Mach Intell       Date:  2010-10-14       Impact factor: 6.226

2.  Bayesian prediction of an epidemic curve.

Authors:  Xia Jiang; Garrick Wallstrom; Gregory F Cooper; Michael M Wagner
Journal:  J Biomed Inform       Date:  2008-06-13       Impact factor: 6.317

3.  Prediction of an Epidemic Curve: A Supervised Classification Approach.

Authors:  Elaine O Nsoesie; Richard Beckman; Madhav Marathe; Bryan Lewis
Journal:  Stat Commun Infect Dis       Date:  2011-10-04

4.  A Dirichlet process model for classifying and forecasting epidemic curves.

Authors:  Elaine O Nsoesie; Scotland C Leman; Madhav V Marathe
Journal:  BMC Infect Dis       Date:  2014-01-09       Impact factor: 3.090

5.  Epidemic curves made easy using the R package incidence.

Authors:  Zhian N Kamvar; Jun Cai; Juliet R C Pulliam; Jakob Schumacher; Thibaut Jombart
Journal:  F1000Res       Date:  2019-01-31

6.  A novel sub-epidemic modeling framework for short-term forecasting epidemic waves.

Authors:  Gerardo Chowell; Amna Tariq; James M Hyman
Journal:  BMC Med       Date:  2019-08-22       Impact factor: 8.775

7.  Spatial infectious disease epidemiology: on the cusp.

Authors:  G Chowell; R Rothenberg
Journal:  BMC Med       Date:  2018-10-18       Impact factor: 8.775

  7 in total

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