Literature DB >> 32505359

Uncovering an Organ's Molecular Architecture at Single-Cell Resolution by Spatially Resolved Transcriptomics.

Jie Liao1, Xiaoyan Lu1, Xin Shao1, Ling Zhu2, Xiaohui Fan3.   

Abstract

Revealing fine-scale cellular heterogeneity among spatial context and the functional and structural foundations of tissue architecture is fundamental within biological research and pharmacology. Unlike traditional approaches involving single molecules or bulk omics, cutting-edge, spatially resolved transcriptomics techniques offer near-single-cell or even subcellular resolution within tissues. Massive information across higher dimensions along with position-coordinating labels can better map the whole 3D transcriptional landscape of tissues. In this review, we focus on developments and strategies in spatially resolved transcriptomics, compare the cell and gene throughput and spatial resolution in detail for existing methods, and highlight the enormous potential in biomedical research.
Copyright © 2020 The Authors. Published by Elsevier Ltd.. All rights reserved.

Keywords:  fluorescence in situ hybridization; in situ sequencing; single-cell RNA-seq; spatial reconstruction; spatial transcriptomics; spatially resolved transcriptomics

Year:  2020        PMID: 32505359     DOI: 10.1016/j.tibtech.2020.05.006

Source DB:  PubMed          Journal:  Trends Biotechnol        ISSN: 0167-7799            Impact factor:   19.536


  41 in total

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Authors:  Alexander J Westermann; Jörg Vogel
Journal:  Nat Rev Genet       Date:  2021-02-17       Impact factor: 53.242

Review 2.  Integrating single-cell and spatial transcriptomics to elucidate intercellular tissue dynamics.

Authors:  Sophia K Longo; Margaret G Guo; Andrew L Ji; Paul A Khavari
Journal:  Nat Rev Genet       Date:  2021-06-18       Impact factor: 53.242

3.  Laser Capture Microdissection-Based mRNA Expression Microarrays and Single-Cell RNA Sequencing in Atherosclerosis Research.

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Review 4.  Application and prospects of single cell sequencing in tumors.

Authors:  Ruo Han Huang; Le Xin Wang; Jing He; Wen Gao
Journal:  Biomark Res       Date:  2021-12-11

5.  Enabling high-throughput single-animal gene-expression studies with molecular and micro-scale technologies.

Authors:  Jason Wan; Hang Lu
Journal:  Lab Chip       Date:  2020-12-15       Impact factor: 6.799

Review 6.  Mechanisms and cell lineages in lymphatic vascular development.

Authors:  Daniyal J Jafree; David A Long; Peter J Scambler; Christiana Ruhrberg
Journal:  Angiogenesis       Date:  2021-04-06       Impact factor: 9.596

Review 7.  Mechanical Regulation of Transcription: Recent Advances.

Authors:  Kaustubh Wagh; Momoko Ishikawa; David A Garcia; Diana A Stavreva; Arpita Upadhyaya; Gordon L Hager
Journal:  Trends Cell Biol       Date:  2021-03-09       Impact factor: 20.808

Review 8.  Museum of spatial transcriptomics.

Authors:  Lambda Moses; Lior Pachter
Journal:  Nat Methods       Date:  2022-03-10       Impact factor: 28.547

Review 9.  Genetic mosaicism in the human brain: from lineage tracing to neuropsychiatric disorders.

Authors:  Sara Bizzotto; Christopher A Walsh
Journal:  Nat Rev Neurosci       Date:  2022-03-23       Impact factor: 34.870

Review 10.  The genus Anaplasma: drawing back the curtain on tick-pathogen interactions.

Authors:  Anya J O'Neal; Nisha Singh; Maria Tays Mendes; Joao H F Pedra
Journal:  Pathog Dis       Date:  2021-04-22       Impact factor: 3.166

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