Literature DB >> 32505165

Dalton Project: A Python platform for molecular- and electronic-structure simulations of complex systems.

Jógvan Magnus Haugaard Olsen1, Simen Reine2, Olav Vahtras3, Erik Kjellgren4, Peter Reinholdt4, Karen Oda Hjorth Dundas1, Xin Li3, Janusz Cukras5, Magnus Ringholm1, Erik D Hedegård6, Roberto Di Remigio1, Nanna H List7, Rasmus Faber8, Bruno Nunes Cabral Tenorio8, Radovan Bast1, Thomas Bondo Pedersen2, Zilvinas Rinkevicius3, Stephan P A Sauer9, Kurt V Mikkelsen9, Jacob Kongsted4, Sonia Coriani8, Kenneth Ruud1, Trygve Helgaker2, Hans Jørgen Aa Jensen4, Patrick Norman3.   

Abstract

The Dalton Project provides a uniform platform access to the underlying full-fledged quantum chemistry codes Dalton and LSDalton as well as the PyFraME package for automatized fragmentation and parameterization of complex molecular environments. The platform is written in Python and defines a means for library communication and interaction. Intermediate data such as integrals are exposed to the platform and made accessible to the user in the form of NumPy arrays, and the resulting data are extracted, analyzed, and visualized. Complex computational protocols that may, for instance, arise due to a need for environment fragmentation and configuration-space sampling of biochemical systems are readily assisted by the platform. The platform is designed to host additional software libraries and will serve as a hub for future modular software development efforts in the distributed Dalton community.

Year:  2020        PMID: 32505165     DOI: 10.1063/1.5144298

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  5 in total

1.  Linear and Nonlinear Optical Properties from TDOMP2 Theory.

Authors:  Håkon Emil Kristiansen; Benedicte Sverdrup Ofstad; Eirill Hauge; Einar Aurbakken; Øyvind Sigmundson Schøyen; Simen Kvaal; Thomas Bondo Pedersen
Journal:  J Chem Theory Comput       Date:  2022-04-18       Impact factor: 6.578

2.  XABOOM: An X-ray Absorption Benchmark of Organic Molecules Based on Carbon, Nitrogen, and Oxygen 1s → π* Transitions.

Authors:  Thomas Fransson; Iulia E Brumboiu; Marta L Vidal; Patrick Norman; Sonia Coriani; Andreas Dreuw
Journal:  J Chem Theory Comput       Date:  2021-02-05       Impact factor: 6.006

3.  The Impact of Retinal Configuration on the Protein-Chromophore Interactions in Bistable Jumping Spider Rhodopsin-1.

Authors:  Jonathan R Church; Jógvan Magnus Haugaard Olsen; Igor Schapiro
Journal:  Molecules       Date:  2021-12-23       Impact factor: 4.411

4.  Linear Weak Scalability of Density Functional Theory Calculations without Imposing Electron Localization.

Authors:  Marcel D Fabian; Ben Shpiro; Roi Baer
Journal:  J Chem Theory Comput       Date:  2022-03-26       Impact factor: 6.006

5.  Deciphering the Spectral Tuning Mechanism in Proteorhodopsin: The Dominant Role of Electrostatics Instead of Chromophore Geometry.

Authors:  Jonathan R Church; Gil S Amoyal; Veniamin A Borin; Suliman Adam; Jógvan Magnus Haugaard Olsen; Igor Schapiro
Journal:  Chemistry       Date:  2022-04-05       Impact factor: 5.020

  5 in total

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