Literature DB >> 32500437

Recent progress on engineering microbial alginate lyases towards their versatile role in biotechnological applications.

Shivakumar Renuka Dharani1, Ramachandran Srinivasan1, Reghunathan Sarath1, Mohandass Ramya2.   

Abstract

Biomass feedstock is an efficient and harmless source of energy. There are various sources of feedstock, such as plant, microbial, macro, and microalgae, and agricultural waste. The major component in biomass feedstock material is a polysaccharide, such as cellulose, cellobiose, starch, and alginate. Alginate is mainly found in macroalgae as one of the significant polysaccharide components. It is made up of β-d-mannuronate (M) and α-l-guluronate (G) blocks. Alginate lyase is an enzyme that degrades alginate by breaking the glycosidic linkage between the poly M and G blocks to liberate oligosaccharides. Several organisms, including bacteria, fungi, viruses, and algae can produce alginate lyases. The species of bacteria, such as Bacillus, Vibrio, Pseudomonas, and Microbulbifer, are some of the important sources of alginate lyases. They are industrially essential enzymes used in food, biofuel, and biomedical industries. There are various assays available to determine the alginate lyase activity qualitatively as well as quantitatively. Qualitatively, different dyes like Gram's iodine, cetyl pyridinium chloride, and rutanium red can be used to visualize the zone formed due to the alginate lyase activity. DNS assay, UV absorption, and the Somogyi-Nelson method help to determine the alginate lyase activity quantitatively. Since the alginate lyase production in the native organisms is relatively lower, the genes encoding alginate lyases are heterologously cloned and expressed in E. coli to maximize the production and to characterize the enzyme. Different chromatographic techniques like size exclusion, affinity, gel permeation, and ion-exchange chromatography are used to purify the protein. In this paper, the source of alginate and alginate lyases, the mechanism of action of the enzyme, the engineering approaches to enhance the enzyme production, its purification strategy, and the potential applications of alginate lyases has been discussed.

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Year:  2020        PMID: 32500437     DOI: 10.1007/s12223-020-00802-8

Source DB:  PubMed          Journal:  Folia Microbiol (Praha)        ISSN: 0015-5632            Impact factor:   2.099


  49 in total

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Authors:  David A Bichara; Xing Zhao; Nathaniel S Hwang; Hatice Bodugoz-Senturk; Michael J Yaremchuk; Mark A Randolph; Orhun K Muratoglu
Journal:  J Surg Res       Date:  2010-04-24       Impact factor: 2.192

Review 2.  Structural and mechanistic classification of uronic acid-containing polysaccharide lyases.

Authors:  Marie-Line Garron; Miroslaw Cygler
Journal:  Glycobiology       Date:  2010-08-30       Impact factor: 4.313

Review 3.  Uronic polysaccharide degrading enzymes.

Authors:  Marie-Line Garron; Miroslaw Cygler
Journal:  Curr Opin Struct Biol       Date:  2014-08-25       Impact factor: 6.809

4.  Purification and characterization of alginate lyase from locally isolated marine Pseudomonas stutzeri MSEA04.

Authors:  Ehab A Beltagy; Aliaa El-Borai; Marina Lewiz; Samy A ElAssar
Journal:  Acta Biol Hung       Date:  2016-09

5.  Chromatographic analysis of alginate degradation by five recombinant alginate lyases from Cellulophaga algicola DSM 14237.

Authors:  Anja Fischer; Daniel Wefers
Journal:  Food Chem       Date:  2019-07-06       Impact factor: 7.514

6.  Enzymatically degradable alginate hydrogel systems to deliver endothelial progenitor cells for potential revasculature applications.

Authors:  Kevin T Campbell; Roberta S Stilhano; Eduardo A Silva
Journal:  Biomaterials       Date:  2018-06-27       Impact factor: 12.479

Review 7.  Polysaccharides from macroalgae: Recent advances, innovative technologies and challenges in extraction and purification.

Authors:  M Garcia-Vaquero; G Rajauria; J V O'Doherty; T Sweeney
Journal:  Food Res Int       Date:  2016-11-19       Impact factor: 6.475

8.  Alginate lyase from Klebsiella pneumoniae, subsp. aerogenes: gene cloning, sequence analysis and high-level production in Escherichia coli.

Authors:  A J Baron; T Y Wong; S J Hicks; P Gacesa; D Willcock; M J McPherson
Journal:  Gene       Date:  1994-05-27       Impact factor: 3.688

9.  In vitro interaction between alginate lyase and amphotericin B against Aspergillus fumigatus biofilm determined by different methods.

Authors:  Francesca Bugli; Brunella Posteraro; Massimiliano Papi; Riccardo Torelli; Alessandro Maiorana; Francesco Paroni Sterbini; Patrizia Posteraro; Maurizio Sanguinetti; Marco De Spirito
Journal:  Antimicrob Agents Chemother       Date:  2012-12-21       Impact factor: 5.191

10.  Biochemical Characteristics and Variable Alginate-Degrading Modes of a Novel Bifunctional Endolytic Alginate Lyase.

Authors:  Yuanyuan Cheng; Dandan Wang; Jingyan Gu; Junge Li; Huihui Liu; Fuchuan Li; Wenjun Han
Journal:  Appl Environ Microbiol       Date:  2017-11-16       Impact factor: 4.792

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  5 in total

Review 1.  Alginate Lyases from Marine Bacteria: An Enzyme Ocean for Sustainable Future.

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Review 2.  Stachybotrys chartarum-A Hidden Treasure: Secondary Metabolites, Bioactivities, and Biotechnological Relevance.

Authors:  Sabrin R M Ibrahim; Hani Choudhry; Amer H Asseri; Mahmoud A Elfaky; Shaimaa G A Mohamed; Gamal A Mohamed
Journal:  J Fungi (Basel)       Date:  2022-05-12

3.  Gut microbiota analysis of Blenniidae fishes including an algae-eating fish and clear boundary formation among isolated Vibrio strains.

Authors:  Masa-Aki Yoshida; Takuma Tanabe; Hideo Akiyoshi; Makoto Kawamukai
Journal:  Sci Rep       Date:  2022-03-17       Impact factor: 4.379

4.  Determination of oligosaccharide product distributions of PL7 alginate lyases by their structural elements.

Authors:  Keke Zhang; Zhijian Li; Qiaoyun Zhu; Huansheng Cao; Xinxin He; Xiao-Hua Zhang; Weizhi Liu; Qianqian Lyu
Journal:  Commun Biol       Date:  2022-08-02

Review 5.  4-Deoxy-l-erythro-5-hexoseulose Uronate (DEH) and DEH Reductase: Key Molecule and Enzyme for the Metabolism and Utilization of Alginate.

Authors:  Shigeyuki Kawai; Wataru Hashimoto
Journal:  Molecules       Date:  2022-01-06       Impact factor: 4.411

  5 in total

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