Literature DB >> 32493730

A requirement for an active proton delivery network supports a compound I-mediated C-C bond cleavage in CYP51 catalysis.

Tatiana Y Hargrove1, Zdzislaw Wawrzak2, F Peter Guengerich1, Galina I Lepesheva3,4.   

Abstract

CYP51 enzymes (sterol 14α-demethylases) are cytochromes P450 that catalyze multistep reactions. The CYP51 reaction occurs in all biological kingdoms and is essential in sterol biosynthesis. It removes the 14α-methyl group from cyclized sterol precursors by first forming an alcohol, then an aldehyde, and finally eliminating formic acid with the introduction of a Δ14-15 double bond in the sterol core. The first two steps are typical hydroxylations, mediated by an electrophilic compound I mechanism. The third step, C-C bond cleavage, has been proposed to involve either compound I (i.e. FeO3 +) or, alternatively, a proton transfer-independent nucleophilic ferric peroxo anion (compound 0, i.e. Fe3 +O2 -). Here, using comparative crystallographic and biochemical analyses of WT human CYP51 (CYP51A1) and its D231A/H314A mutant, whose proton delivery network is destroyed (as evidenced in a 1.98-Å X-ray structure in complex with lanosterol), we demonstrate that deformylation of the 14α-carboxaldehyde intermediate requires an active proton relay network to drive the catalysis. These results indicate a unified, compound I-based mechanism for all three steps of the CYP51 reaction, as previously established for CYP11A1 and CYP19A1. We anticipate that our approach can be applied to mechanistic studies of other P450s that catalyze multistep reactions, such as C-C bond cleavage.
© 2020 Hargrove et al.

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Keywords:  CYP51; C–C bond cleavage; X-ray crystallography; X-ray structure; compound I; conformational change; cytochrome P450; cytochrome P450 mechanism; deformylation; enzyme catalysis; enzyme mechanism; hydroxylation; proton relay; sterol 14α-demethylase; sterol biosynthesis; structural biology

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Year:  2020        PMID: 32493730      PMCID: PMC7380200          DOI: 10.1074/jbc.RA120.014064

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  38 in total

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Review 2.  Structure and chemistry of cytochrome P450.

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Authors:  Sarvind Tripathi; Huiying Li; Thomas L Poulos
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Review 4.  Structural basis for conservation in the CYP51 family.

Authors:  Galina I Lepesheva; Michael R Waterman
Journal:  Biochim Biophys Acta       Date:  2010-06-11

5.  Uncoupling of the cytochrome P-450cam monooxygenase reaction by a single mutation, threonine-252 to alanine or valine: possible role of the hydroxy amino acid in oxygen activation.

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Journal:  Proc Natl Acad Sci U S A       Date:  1989-10       Impact factor: 11.205

6.  Peroxo-iron and oxenoid-iron species as alternative oxygenating agents in cytochrome P450-catalyzed reactions: switching by threonine-302 to alanine mutagenesis of cytochrome P450 2B4.

Authors:  A D Vaz; S J Pernecky; G M Raner; M J Coon
Journal:  Proc Natl Acad Sci U S A       Date:  1996-05-14       Impact factor: 11.205

7.  CYP51 from Trypanosoma brucei is obtusifoliol-specific.

Authors:  Galina I Lepesheva; W David Nes; Wenxu Zhou; George C Hill; Michael R Waterman
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8.  Mechanism of the acyl-carbon cleavage and related reactions catalyzed by multifunctional P-450s: studies on cytochrome P-450(17)alpha.

Authors:  M Akhtar; D Corina; S Miller; A Z Shyadehi; J N Wright
Journal:  Biochemistry       Date:  1994-04-12       Impact factor: 3.162

Review 9.  CYP51 as drug targets for fungi and protozoan parasites: past, present and future.

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Journal:  Parasitology       Date:  2018-04-12       Impact factor: 3.234

10.  P450-BM3-Catalyzed Sulfoxidation versus Hydroxylation: A Common or Two Different Catalytically Active Species?

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  6 in total

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Authors:  Tatiana Y Hargrove; Zdzislaw Wawrzak; Girish Rachakonda; W David Nes; Fernando Villalta; F Peter Guengerich; Galina I Lepesheva
Journal:  J Med Chem       Date:  2021-11-29       Impact factor: 7.446

2.  Diverse reactions catalyzed by cytochrome P450 and biosynthesis of steroid hormone.

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Journal:  Biophys Physicobiol       Date:  2022-06-01

3.  Concerning P450 Evolution: Structural Analyses Support Bacterial Origin of Sterol 14α-Demethylases.

Authors:  David C Lamb; Tatiana Y Hargrove; Bin Zhao; Zdzislaw Wawrzak; Jared V Goldstone; William David Nes; Steven L Kelly; Michael R Waterman; John J Stegeman; Galina I Lepesheva
Journal:  Mol Biol Evol       Date:  2021-03-09       Impact factor: 16.240

Review 4.  Roles for Structural Biology in the Discovery of Drugs and Agrochemicals Targeting Sterol 14α-Demethylases.

Authors:  Brian C Monk; Mikhail V Keniya
Journal:  J Fungi (Basel)       Date:  2021-01-20

5.  DFT Mechanistic Insights into Aldehyde Deformylations with Biomimetic Metal-Dioxygen Complexes: Distinct Mechanisms and Reaction Rules.

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6.  Unravelling the role of transient redox partner complexes in P450 electron transfer mechanics.

Authors:  Tatiana Y Hargrove; David C Lamb; Jarrod A Smith; Zdzislaw Wawrzak; Steven L Kelly; Galina I Lepesheva
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  6 in total

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