Literature DB >> 32488384

Chemically tailoring nanopores for single-molecule sensing and glycomics.

James T Hagan1, Brian S Sheetz1, Y M Nuwan D Y Bandara1, Buddini I Karawdeniya1, Melissa A Morris2, Robert B Chevalier1, Jason R Dwyer3.   

Abstract

A nanopore can be fairly-but uncharitably-described as simply a nanofluidic channel through a thin membrane. Even this simple structural description holds utility and underpins a range of applications. Yet significant excitement for nanopore science is more readily ignited by the role of nanopores as enabling tools for biomedical science. Nanopore techniques offer single-molecule sensing without the need for chemical labelling, since in most nanopore implementations, matter is its own label through its size, charge, and chemical functionality. Nanopores have achieved considerable prominence for single-molecule DNA sequencing. The predominance of this application, though, can overshadow their established use for nanoparticle characterization and burgeoning use for protein analysis, among other application areas. Analyte scope continues to be expanded, and with increasing analyte complexity, success will increasingly hinge on control over nanopore surface chemistry to tune the nanopore, itself, and to moderate analyte transport. Carbohydrates are emerging as the latest high-profile target of nanopore science. Their tremendous chemical and structural complexity means that they challenge conventional chemical analysis methods and thus present a compelling target for unique nanopore characterization capabilities. Furthermore, they offer molecular diversity for probing nanopore operation and sensing mechanisms. This article thus focuses on two roles of chemistry in nanopore science: its use to provide exquisite control over nanopore performance, and how analyte properties can place stringent demands on nanopore chemistry. Expanding the horizons of nanopore science requires increasing consideration of the role of chemistry and increasing sophistication in the realm of chemical control over this nanoscale milieu.

Entities:  

Keywords:  Carbohydrate; Electrokinetics; Nanofluidics; Nanopore; Silicon nitride; Single-molecule sensing

Mesh:

Year:  2020        PMID: 32488384     DOI: 10.1007/s00216-020-02717-2

Source DB:  PubMed          Journal:  Anal Bioanal Chem        ISSN: 1618-2642            Impact factor:   4.142


  4 in total

1.  Assessment of 1/f noise associated with nanopores fabricated through chemically tuned controlled dielectric breakdown.

Authors:  Jugal Saharia; Y M Nuwan D Y Bandara; Buddini I Karawdeniya; George Alexandrakis; Min Jun Kim
Journal:  Electrophoresis       Date:  2021-01-06       Impact factor: 3.535

2.  ABC Spotlight on single-molecule detection.

Authors:  Günter Gauglitz
Journal:  Anal Bioanal Chem       Date:  2020-08-27       Impact factor: 4.142

3.  Comprehensive structural assignment of glycosaminoglycan oligo- and polysaccharides by protein nanopore.

Authors:  Parisa Bayat; Charlotte Rambaud; Bernard Priem; Matthieu Bourderioux; Mélanie Bilong; Salomé Poyer; Manuela Pastoriza-Gallego; Abdelghani Oukhaled; Jérôme Mathé; Régis Daniel
Journal:  Nat Commun       Date:  2022-08-30       Impact factor: 17.694

Review 4.  Epigenetic tumor heterogeneity in the era of single-cell profiling with nanopore sequencing.

Authors:  Yohannis Wondwosen Ahmed; Berhan Ababaw Alemu; Sisay Addisu Bekele; Solomon Tebeje Gizaw; Muluken Fekadie Zerihun; Endriyas Kelta Wabalo; Maria Degef Teklemariam; Tsehayneh Kelemu Mihrete; Endris Yibru Hanurry; Tensae Gebru Amogne; Assaye Desalegne Gebrehiwot; Tamirat Nida Berga; Ebsitu Abate Haile; Dessiet Oma Edo; Bizuwork Derebew Alemu
Journal:  Clin Epigenetics       Date:  2022-08-27       Impact factor: 7.259

  4 in total

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