Literature DB >> 32486661

Siesta: Recent developments and applications.

Alberto García1, Nick Papior2, Arsalan Akhtar3, Emilio Artacho4, Volker Blum5, Emanuele Bosoni1, Pedro Brandimarte6, Mads Brandbyge7, J I Cerdá8, Fabiano Corsetti4, Ramón Cuadrado3, Vladimir Dikan1, Jaime Ferrer9, Julian Gale10, Pablo García-Fernández11, V M García-Suárez9, Sandra García3, Georg Huhs12, Sergio Illera3, Richard Korytár13, Peter Koval14, Irina Lebedeva4, Lin Lin15, Pablo López-Tarifa16, Sara G Mayo17, Stephan Mohr12, Pablo Ordejón3, Andrei Postnikov18, Yann Pouillon11, Miguel Pruneda3, Roberto Robles16, Daniel Sánchez-Portal6, Jose M Soler17, Rafi Ullah4, Victor Wen-Zhe Yu5, Javier Junquera11.   

Abstract

A review of the present status, recent enhancements, and applicability of the Siesta program is presented. Since its debut in the mid-1990s, Siesta's flexibility, efficiency, and free distribution have given advanced materials simulation capabilities to many groups worldwide. The core methodological scheme of Siesta combines finite-support pseudo-atomic orbitals as basis sets, norm-conserving pseudopotentials, and a real-space grid for the representation of charge density and potentials and the computation of their associated matrix elements. Here, we describe the more recent implementations on top of that core scheme, which include full spin-orbit interaction, non-repeated and multiple-contact ballistic electron transport, density functional theory (DFT)+U and hybrid functionals, time-dependent DFT, novel reduced-scaling solvers, density-functional perturbation theory, efficient van der Waals non-local density functionals, and enhanced molecular-dynamics options. In addition, a substantial effort has been made in enhancing interoperability and interfacing with other codes and utilities, such as wannier90 and the second-principles modeling it can be used for, an AiiDA plugin for workflow automatization, interface to Lua for steering Siesta runs, and various post-processing utilities. Siesta has also been engaged in the Electronic Structure Library effort from its inception, which has allowed the sharing of various low-level libraries, as well as data standards and support for them, particularly the PSeudopotential Markup Language definition and library for transferable pseudopotentials, and the interface to the ELectronic Structure Infrastructure library of solvers. Code sharing is made easier by the new open-source licensing model of the program. This review also presents examples of application of the capabilities of the code, as well as a view of on-going and future developments.

Year:  2020        PMID: 32486661     DOI: 10.1063/5.0005077

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  10 in total

1.  Unrevealing the interaction between O2 molecules and poly(3-hexylthiophene-2,5-diyl) (P3HT).

Authors:  Marcelo Fernandes; Ernesto Osvaldo Wrasse; Caio Junji Kawata Koyama; Florian Steffen Günther; Douglas José Coutinho
Journal:  RSC Adv       Date:  2022-06-23       Impact factor: 4.036

2.  Novel Van Der Waals Heterostructures Based on Borophene, Graphene-like GaN and ZnO for Nanoelectronics: A First Principles Study.

Authors:  Michael M Slepchenkov; Dmitry A Kolosov; Olga E Glukhova
Journal:  Materials (Basel)       Date:  2022-06-08       Impact factor: 3.748

Review 3.  Dynamics & Spectroscopy with Neutrons-Recent Developments & Emerging Opportunities.

Authors:  Kacper Drużbicki; Mattia Gaboardi; Felix Fernandez-Alonso
Journal:  Polymers (Basel)       Date:  2021-04-29       Impact factor: 4.329

4.  An ab initio study of the magnetic properties of strontium hexaferrite.

Authors:  C Tejera-Centeno; S Gallego; J I Cerdá
Journal:  Sci Rep       Date:  2021-01-21       Impact factor: 4.379

5.  Mixing ReaxFF parameters for transition metal oxides using force-matching method.

Authors:  Adam Włodarczyk; Mariusz Uchroński; Agata Podsiadły-Paszkowska; Joanna Irek; Bartłomiej M Szyja
Journal:  J Mol Model       Date:  2021-12-14       Impact factor: 1.810

6.  Nanotubes from the Misfit Layered Compound (SmS)1.19TaS2: Atomic Structure, Charge Transfer, and Electrical Properties.

Authors:  M B Sreedhara; Kristýna Bukvišová; Azat Khadiev; Daniel Citterberg; Hagai Cohen; Viktor Balema; Arjun K Pathak; Dmitri Novikov; Gregory Leitus; Ifat Kaplan-Ashiri; Miroslav Kolíbal; Andrey N Enyashin; Lothar Houben; Reshef Tenne
Journal:  Chem Mater       Date:  2022-02-10       Impact factor: 9.811

7.  Linear Weak Scalability of Density Functional Theory Calculations without Imposing Electron Localization.

Authors:  Marcel D Fabian; Ben Shpiro; Roi Baer
Journal:  J Chem Theory Comput       Date:  2022-03-26       Impact factor: 6.006

8.  The effects of substrate and stacking in bilayer borophene.

Authors:  Shobair Mohammadi Mozvashi; Mojde Rezaee Givi; Meysam Bagheri Tagani
Journal:  Sci Rep       Date:  2022-08-11       Impact factor: 4.996

9.  Dialogue on analytical and ab initio methods in attoscience.

Authors:  Gregory S J Armstrong; Margarita A Khokhlova; Marie Labeye; Andrew S Maxwell; Emilio Pisanty; Marco Ruberti
Journal:  Eur Phys J D At Mol Opt Phys       Date:  2021-07-20       Impact factor: 1.425

10.  Towards Predicting the Sequential Appearance of Zeolitic Imidazolate Frameworks Synthesized by Mechanochemistry.

Authors:  Mohamed Cherif; Gaixia Zhang; Yang Gao; Shuhui Sun; François Vidal
Journal:  Molecules       Date:  2022-03-17       Impact factor: 4.411

  10 in total

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