Literature DB >> 32485593

Age-Related Changes in Hair Shaft Protein Profiling and Genetically Variant Peptides.

Tempest J Plott1, Noreen Karim2, Blythe P Durbin-Johnson3, Dionne P Swift4, R Scott Youngquist4, Michelle Salemi5, Brett S Phinney5, David M Rocke3, Michael G Davis4, Glendon J Parker1, Robert H Rice6.   

Abstract

Recent reports highlight possible improvements in individual identification using proteomic information from human hair evidence. These reports have stimulated investigation of parameters that affect the utility of proteomic information. In addition to variables already studied relating to processing technique and anatomic origin of hair shafts, an important variable is hair ageing. Present work focuses on the effect of age on protein profiling and analysis of genetically variant peptides (GVPs). Hair protein profiles may be affected by developmental and physiological changes with age of the donor, exposure to different environmental conditions and intrinsic processes, including during storage. First, to explore whether general trends were evident in the population at different ages, hair samples were analyzed from groups of different subjects in their 20's, 40's and 60's. No significant differences were seen as a function of age, but consistent differences were evident between European American and African American hair profiles. Second, samples collected from single individuals at different ages were analyzed. Mostly, these showed few protein expression level differences over periods of 10 years or less, but samples from subjects at 44 and 65 year intervals were distinctly different in profile. The results indicate that use of protein profiling for personal identification, if practical, would be limited to decadal time intervals. Moreover, batch effects were clearly evident in samples processed by different staff. To investigate the contribution of storage (at room temperature) in affecting the outcomes, the same proteomic digests were analyzed for GVPs. In samples stored over 10 years, GVPs were reduced in number in parallel with the yield of identified proteins and unique peptides. However, a very different picture emerged with respect to personal identification. Numbers of GVPs sufficed to distinguish individuals despite the age differences of the samples. As a practical matter, three hair samples per person provided nearly the maximal number obtained from 5 or 6 samples. The random match probability (where the log increased in proportion to the number of GVPs) reached as high as 1 in 108. The data indicate that GVP results are dependent on the single nucleotide polymorphism profile of the donor genome, where environmental/processing factors affect only the yield, and thus are consistent despite the ages of the donors and samples and batchwise effects in processing. This conclusion is critical for application to casework where the samples may be in storage for long periods and used to match samples recently collected.
Copyright © 2020 Elsevier B.V. All rights reserved.

Entities:  

Keywords:  Proteomic profiling; ageing; forensic investigation; genetically variant peptides; human hair

Year:  2020        PMID: 32485593      PMCID: PMC7388652          DOI: 10.1016/j.fsigen.2020.102309

Source DB:  PubMed          Journal:  Forensic Sci Int Genet        ISSN: 1872-4973            Impact factor:   4.882


  28 in total

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Authors:  S N Kim; S Y Lee; M H Choi; K M Joo; S H Kim; J S Koh; W S Park
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2.  Chronological ageing of human hair keratin fibres.

Authors:  S Thibaut; E de Becker; B A Bernard; M Huart; F Fiat; N Baghdadli; G S Luengo; F Leroy; P Angevin; A M Kermoal; S Muller; M Peron; G Provot; S Kravtchenko; D Saint-Léger; G Desbois; L Gauchet; K Nowbuth; A Galliano; J Y Kempf; I Silberzan
Journal:  Int J Cosmet Sci       Date:  2010-12       Impact factor: 2.970

3.  Advanced hair damage model from ultra-violet radiation in the presence of copper.

Authors:  J M Marsh; M G Davis; M J Flagler; Y Sun; T Chaudhary; M Mamak; D W McComb; R E A Williams; K D Greis; L Rubio; L Coderch
Journal:  Int J Cosmet Sci       Date:  2015-06-09       Impact factor: 2.970

4.  Role of copper in photochemical damage to hair.

Authors:  J M Marsh; R Iveson; M J Flagler; M G Davis; A B Newland; K D Greis; Y Sun; T Chaudhary; E R Aistrup
Journal:  Int J Cosmet Sci       Date:  2013-10-10       Impact factor: 2.970

5.  Lpcat3-dependent production of arachidonoyl phospholipids is a key determinant of triglyceride secretion.

Authors:  Xin Rong; Bo Wang; Merlow M Dunham; Per Niklas Hedde; Jinny S Wong; Enrico Gratton; Stephen G Young; David A Ford; Peter Tontonoz
Journal:  Elife       Date:  2015-03-25       Impact factor: 8.140

6.  Hair Proteome Variation at Different Body Locations on Genetically Variant Peptide Detection for Protein-Based Human Identification.

Authors:  Fanny Chu; Katelyn E Mason; Deon S Anex; A Daniel Jones; Bradley R Hart
Journal:  Sci Rep       Date:  2019-05-21       Impact factor: 4.379

7.  The PRIDE database and related tools and resources in 2019: improving support for quantification data.

Authors:  Yasset Perez-Riverol; Attila Csordas; Jingwen Bai; Manuel Bernal-Llinares; Suresh Hewapathirana; Deepti J Kundu; Avinash Inuganti; Johannes Griss; Gerhard Mayer; Martin Eisenacher; Enrique Pérez; Julian Uszkoreit; Julianus Pfeuffer; Timo Sachsenberg; Sule Yilmaz; Shivani Tiwary; Jürgen Cox; Enrique Audain; Mathias Walzer; Andrew F Jarnuczak; Tobias Ternent; Alvis Brazma; Juan Antonio Vizcaíno
Journal:  Nucleic Acids Res       Date:  2019-01-08       Impact factor: 16.971

8.  Human hair shaft proteomic profiling: individual differences, site specificity and cuticle analysis.

Authors:  Chelsea N Laatsch; Blythe P Durbin-Johnson; David M Rocke; Sophie Mukwana; Abby B Newland; Michael J Flagler; Michael G Davis; Richard A Eigenheer; Brett S Phinney; Robert H Rice
Journal:  PeerJ       Date:  2014-08-05       Impact factor: 2.984

9.  Studies on the Proteome of Human Hair - Identification of Histones and Deamidated Keratins.

Authors:  Sunil S Adav; Roopa S Subbaiaih; Swat Kim Kerk; Amelia Yilin Lee; Hui Ying Lai; Kee Woei Ng; Siu Kwan Sze; Artur Schmidtchen
Journal:  Sci Rep       Date:  2018-01-25       Impact factor: 4.379

10.  Using wearable devices for assessing the impacts of hair exposome in Brazil.

Authors:  Rodrigo De Vecchi; Júlia da Silveira Carvalho Ripper; Daniel Roy; Lionel Breton; Alexandre Germano Marciano; Plínio Marcos Bernardo de Souza; Marcelo de Paula Corrêa
Journal:  Sci Rep       Date:  2019-09-16       Impact factor: 4.379

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Authors:  Ayelet M Rosenberg; Shannon Rausser; Junting Ren; Eugene V Mosharov; Gabriel Sturm; R Todd Ogden; Purvi Patel; Rajesh Kumar Soni; Clay Lacefield; Desmond J Tobin; Ralf Paus; Martin Picard
Journal:  Elife       Date:  2021-06-22       Impact factor: 8.140

2.  Love is in the hair: arginine methylation of human hair proteins as novel cardiovascular biomarkers.

Authors:  Alistair James Marsden; David R J Riley; Stefan Birkett; Quentin Rodriguez-Barucg; Barbara-Ann Guinn; Sean Carroll; Lee Ingle; Thozhukat Sathyapalan; Pedro Beltran-Alvarez
Journal:  Amino Acids       Date:  2021-06-28       Impact factor: 3.789

  2 in total

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