Literature DB >> 32480312

It's Morphin' time: how multiple signals converge on ARF transcription factors to direct development.

Amy Lanctot1, Jennifer L Nemhauser2.   

Abstract

Plant development programs are constantly updated by information about environmental conditions, currently available resources, and sites of active organogenesis. Much of this information is encoded in modifications of transcription factors that lead to changes in their relative abundance, activity and localization. Recent work on the Auxin Response Factor family of transcription factors has highlighted the large diversity of such modifications, as well as how they may work synergistically or antagonistically to regulate downstream responses. ARFs can be regulated by alternative splicing, post-translational modification, and subcellular localization, among many other mechanisms. Beyond the many ways ARFs themselves can be regulated, they can also act cooperatively with other transcription factors to enable highly complex genetic networks with distinct developmental outcomes. Multi-level regulation like what has been documented for ARFs has the capacity to generate flexibility in transcriptional outputs, as well as resilience to short-term perturbations.
Copyright © 2020 Elsevier Ltd. All rights reserved.

Entities:  

Year:  2020        PMID: 32480312      PMCID: PMC7704782          DOI: 10.1016/j.pbi.2020.04.008

Source DB:  PubMed          Journal:  Curr Opin Plant Biol        ISSN: 1369-5266            Impact factor:   7.834


  17 in total

Review 1.  Auxin Response Factors: output control in auxin biology.

Authors:  Mark Roosjen; Sébastien Paque; Dolf Weijers
Journal:  J Exp Bot       Date:  2018-01-04       Impact factor: 6.992

2.  Bipartite promoter element required for auxin response.

Authors:  Cristina L Walcher; Jennifer L Nemhauser
Journal:  Plant Physiol       Date:  2011-11-18       Impact factor: 8.340

3.  Oscillating gene expression determines competence for periodic Arabidopsis root branching.

Authors:  Miguel A Moreno-Risueno; Jaimie M Van Norman; Antonio Moreno; Jingyuan Zhang; Sebastian E Ahnert; Philip N Benfey
Journal:  Science       Date:  2010-09-10       Impact factor: 47.728

4.  Cyclic programmed cell death stimulates hormone signaling and root development in Arabidopsis.

Authors:  Wei Xuan; Leah R Band; Robert P Kumpf; Daniël Van Damme; Boris Parizot; Gieljan De Rop; Davy Opdenacker; Barbara K Möller; Noemi Skorzinski; Maria F Njo; Bert De Rybel; Dominique Audenaert; Moritz K Nowack; Steffen Vanneste; Tom Beeckman
Journal:  Science       Date:  2016-01-22       Impact factor: 47.728

5.  Root branching toward water involves posttranslational modification of transcription factor ARF7.

Authors:  Beatriz Orosa-Puente; Nicola Leftley; Daniel von Wangenheim; Jason Banda; Anjil K Srivastava; Kristine Hill; Jekaterina Truskina; Rahul Bhosale; Emily Morris; Moumita Srivastava; Britta Kümpers; Tatsuaki Goh; Hidehiro Fukaki; Joop E M Vermeer; Teva Vernoux; José R Dinneny; Andrew P French; Anthony Bishopp; Ari Sadanandom; Malcolm J Bennett
Journal:  Science       Date:  2018-12-21       Impact factor: 47.728

6.  Constitutive auxin response in Physcomitrella reveals complex interactions between Aux/IAA and ARF proteins.

Authors:  Meirav Lavy; Michael J Prigge; Sibo Tao; Stephanie Shain; April Kuo; Kerstin Kirchsteiger; Mark Estelle
Journal:  Elife       Date:  2016-06-01       Impact factor: 8.140

7.  Auxin regulates functional gene groups in a fold-change-specific manner in Arabidopsis thaliana roots.

Authors:  N A Omelyanchuk; D S Wiebe; D D Novikova; V G Levitsky; N Klimova; V Gorelova; C Weinholdt; G V Vasiliev; E V Zemlyanskaya; N A Kolchanov; A V Kochetov; I Grosse; V V Mironova
Journal:  Sci Rep       Date:  2017-05-30       Impact factor: 4.379

8.  CrY2H-seq: a massively multiplexed assay for deep-coverage interactome mapping.

Authors:  Shelly A Trigg; Renee M Garza; Andrew MacWilliams; Joseph R Nery; Anna Bartlett; Rosa Castanon; Adeline Goubil; Joseph Feeney; Ronan O'Malley; Shao-Shan C Huang; Zhuzhu Z Zhang; Mary Galli; Joseph R Ecker
Journal:  Nat Methods       Date:  2017-06-26       Impact factor: 28.547

9.  Double-slit photoelectron interference in strong-field ionization of the neon dimer.

Authors:  Maksim Kunitski; Nicolas Eicke; Pia Huber; Jonas Köhler; Stefan Zeller; Jörg Voigtsberger; Nikolai Schlott; Kevin Henrichs; Hendrik Sann; Florian Trinter; Lothar Ph H Schmidt; Anton Kalinin; Markus S Schöffler; Till Jahnke; Manfred Lein; Reinhard Dörner
Journal:  Nat Commun       Date:  2019-01-02       Impact factor: 14.919

10.  Auxin promotion of seedling growth via ARF5 is dependent on the brassinosteroid-regulated transcription factors BES1 and BEH4.

Authors:  Anahit Galstyan; Jennifer L Nemhauser
Journal:  Plant Direct       Date:  2019-09-04
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  5 in total

Review 1.  A new take on organelle-mediated stress sensing in plants.

Authors:  Isaac J Dopp; Xiaodong Yang; Sally A Mackenzie
Journal:  New Phytol       Date:  2021-04-17       Impact factor: 10.323

2.  Auxin-induced AUXIN RESPONSE FACTOR4 activates APETALA1 and FRUITFULL to promote flowering in woodland strawberry.

Authors:  Xiangxiang Dong; Yanjun Li; Yuhan Guan; Shaoxi Wang; He Luo; Xiaoming Li; He Li; Zhihong Zhang
Journal:  Hortic Res       Date:  2021-05-01       Impact factor: 6.793

3.  Resequencing of 388 cassava accessions identifies valuable loci and selection for variation in heterozygosity.

Authors:  Wei Hu; Changmian Ji; Zhe Liang; Jianqiu Ye; Wenjun Ou; Zehong Ding; Gang Zhou; Weiwei Tie; Yan Yan; Jinghao Yang; Liming Ma; Xiaoying Yang; Yunxie Wei; Zhiqiang Jin; Jianghui Xie; Ming Peng; Wenquan Wang; Anping Guo; Biyu Xu; Jianchun Guo; Songbi Chen; Mingcheng Wang; Yang Zhou; Xiaolong Li; Ruoxi Li; Xinhui Xiao; Zhongqing Wan; Feifei An; Jie Zhang; Qingyun Leng; Yin Li; Haitao Shi; Ray Ming; Kaimian Li
Journal:  Genome Biol       Date:  2021-11-16       Impact factor: 13.583

4.  Identification of ARF family in blueberry and its potential involvement of fruit development and pH stress response.

Authors:  Xuyan Li; Xiaoyi Zhang; Tianran Shi; Min Chen; Chengguo Jia; Jingying Wang; Zhixia Hou; Junyou Han; Shaomin Bian
Journal:  BMC Genomics       Date:  2022-04-27       Impact factor: 4.547

Review 5.  Sulfur signaling and starvation response in Arabidopsis.

Authors:  Daniela Ristova; Stanislav Kopriva
Journal:  iScience       Date:  2022-04-11
  5 in total

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