Bing He1, Hongwei Zhou1. 1. College of Chemistry and Life Science, Institute of Functional Molecules, Chengdu Normal University, Chengdu 611130, P.R. China.
Abstract
A nonplanar extended π-system can be found not only in compounds formed by multiple ortho-fused benzenes, such as helicenes and corannulenes, but also in compounds formed by bonding of atoms on the large π-extended rings. (1,3,5-Triazine)2n (n ≥ 3) are the latter type of compounds that are characterized by monomer units composed entirely of a 1,3,5-triazine core (general formula: C3N3). The first seven polymers (C3N3)2n (n = 3-9) with a drum shape were investigated computationally. Analyses of natural bonding orbitals and atoms in molecules were applied to investigate the bonding properties. In contrast to the planar structure of the 1,3,5-triazine core, the monomer units in (C3N3)2n (n = 3-9) are transformed from their planar π-system to a warped one. Similar to properties of the nonplanar π-system in [n]helicenes and corannulenes, the nonplanar heterocyclic aromatic configuration of the polymerization units is the determinant of the physical and chemical properties of these polymers. The discovery of nonplanar heterocyclic aromatic structures opens up a broad prospect for the study of azacyclic compounds. The results will be the supplement to the study of heterocyclic helicenes and corannulenes.
A nonplanar extended π-system can be found not only in compounds formed by multiple ortho-fused benzenes, such as helicenes and corannulenes, but also in compounds formed by bonding of atoms on the large π-extended rings. (1,3,5-Triazine)2n (n ≥ 3) are the latter type of compounds that are characterized by monomer units composed entirely of a 1,3,5-triazine core (general formula: C3N3). The first seven polymers (C3N3)2n (n = 3-9) with a drum shape were investigated computationally. Analyses of natural bonding orbitals and atoms in molecules were applied to investigate the bonding properties. In contrast to the planar structure of the 1,3,5-triazine core, the monomer units in (C3N3)2n (n = 3-9) are transformed from their planar π-system to a warped one. Similar to properties of the nonplanar π-system in [n]helicenes and corannulenes, the nonplanar heterocyclic aromatic configuration of the polymerization units is the determinant of the physical and chemical properties of these polymers. The discovery of nonplanar heterocyclic aromatic structures opens up a broad prospect for the study of azacyclic compounds. The results will be the supplement to the study of heterocyclic helicenes and corannulenes.
As
widely used reactants in syntheses, the heterocyclic aromatic
1,3,5-triazine-based compounds have been subjected to extensive research
theoretically and experimentally[1,2] owing to their high
stabilities, low solubilities, and little chemical reactivities.[3] Three ortho- and peri-fused 1,3,5-triazine rings can form a concentric nitrogen atom,
the coplanar π-extended core of molecule C6N7H3, called tri-s-triazine. Planar
C6N7H3 and its substitutive derivatives
C6N7R3 were investigated experimentally[4−7] and theoretically[8−10] in detail. Three ortho- and peri-fused 1,3,5-triazine rings can also be designed and
optimized as a stable molecule of C7N6H6, which is featured to the pyramidal, carbon-centered (or
rather, pyramidal vertex) core frame C7N6[11] where the three fused 1,3,5-triazine rings are
transformed to a nonplanar π-extended structure. The carbon
atom at the pyramidal vertex of the core frame C7N6 is very reactive, so much so that it exhibits strong carbanionoid
or radical properties.[11] For the past few
years, nonplanar polycyclic aromatic compounds with helical chirality,
such as helicenes[12]and corannulenes,[13] have attracted increasing attention for their
unique helical structure, physical properties,[14] and wide potential applications in asymmetric synthesis,[15] self-assembly,[16] chiral
materials,[17] and optoelectronic materials.[18] In contrast to a large number of studies on
nonplanar polycyclic aromatic polymers with a monomer unit of benzene
rings, studies on nonplanar heterocyclic aromatic polymers with a
monomer unit of 1,3,5-triazine rings are rare. It has been verified
that the nonplanar (warped) π-system does exist thermodynamically
and makes the compounds containing it exhibit different chemical properties
in our previous work.[11] Another type of
polycyclic aromatic polymers can be designed by bonding two aromatic
rings, such as diphenylene and terphenyl, instead of ortho- and peri-fused rings. Similarly, each 1,3,5-triazine
can bond to other three 1,3,5-triazines by its three carbon atoms.
Thus, the polycyclic aromatic polymers (C3N3) are formed, where the polymers consist
fully of a 1,3,5-triazine core (i.e., C3N3).
In (C3N3), the
polymerization units no longer retain the planar π-extended
configurations but are transformed to nonplanar, convex/concave ones.
Given the special properties of azacyclic aromatic compounds such
as triazines, combined with their warped π-extended configurations,
polymer (C3N3) may
be endowed with more unique physicochemical properties and may be
a new kind of nanoparticle or nanomaterial.
Results
and Discussion
Molecular Structures and
Definitions
2,4,6-Tricyano-1,3,5-triazine (denoted as R)[19,20] is a very widely used chemical
raw material.
Assuming that multiple R can be polymerized
(addition polymerization instead of condensation polymerization) by
their whole nitrile groups, a class of new compounds (general formula:
(C3N3)) containing
only triazine nuclei will be formed. Obviously, m must be an even number for a closed-shell system, and subsequently,
polymer (C3N3) can
be expressed as polymer (C3N3)2, which is denoted as R, where R = (C3N3)2 and subscript is a
specific number. Since all nitrile groups participate in polymerization,
there is no nitrile group left in R. Each nitrile group is polymerized with two other nitrile
groups to form an s-triazinepolymerization unit,
and the final R are surely
three-dimensional structures with a geometric shape of a drum after
optimization. The drum-shaped structures and the nonplanar, convex/concave
π-system of the 1,3,5-triazene unit are the typical characteristics
of this kind of polymer.In this work, the varieties of molecular
structural parameters (bond lengths, bond angles, and dihedral angles)
are the focus as the number of polymerization units increases. Obviously,
it is difficult to compare all the structural parameters of these
pan class="Chemical">polymers because the total atoms contained in each polymer of R are different and the serial
numbers of bonding atoms (C–C bonds) between the polymerization
(heteroaromatic s-triazine core) units are not exactly
the same among R. As mentioned
above, the molecules in R are in the shape of a drum, with the z axis coincident
with the rotating principal axis. There is some symmetry between the
polymerization units (see Table S1 in the
Supporting Information). This means that small part of a geometric
structure can carry the required information of a molecule in R. The part of the first polymerization
unit (formed by N1, C2, N3, C4, N5, and C6 of s-triazine
ring) and its three bonding units is the most representative. To facilitate
the comparison of the structural parameters of each polymer, it needs
to renumber the atoms on the three s-triazine units,
which are bonded to the first polymerization unit. Fortunately, the
atom C6 is always bonded to the atom C8 on another polymerization
unit in all polymers. Therefore, only the atoms on the two polymerization
units, which are bonded to atoms C2 and C4, respectively, need to
be renumbered. In fact, it just needs to renumber the two carbon atoms
that are bonded to atoms C2 and C4 and the two adjacent nitrogen atoms
of both bonding carbon atoms. The carbon atom that is bonded to C2
is renumbered to 8′ (C8′). The smaller serial number
of the nitrogen atom that is bonded to C8′ is renumbered as
7′ (N7′), and another nitrogen atom that is bonded to
C8′ is renumbered as 9′ (N9′). Similarly, the
carbon atom that is bonded to atom C4 is renumbered to 8″ (C8″).
The smaller serial number of nitrogen atom that is bonded to C8″
is renumbered as 7″ (N7″), and another nitrogen atom
that is bonded to C8″ is renumbered as 9″ (N9″)
(see Figure ). The
renumbered atoms vs their original serial numbers in R are listed in Table .
Figure 1
Renumbered atoms and their corresponding original
serial numbers
in the 3D view of R (the groups of atoms
surrounded by lines).
Table 1
Renumbered
Atoms and Their Corresponding
Original Serial Numbers in R (R = (C3N3)2, = 3–9)
polymer
N7′
C8′
N9′
N7″
C8″
N9″
R3
21
22
23
25
26
27
R4
21
22
23
25
26
27
R5
27
28
29
31
32
33
R6
31
36
35
37
38
39
R7
67
72
71
31
32
33
R8
67
72
71
31
32
33
R9
67
72
71
31
32
33
Renumbered atoms and their corresponding original
serial numbers
in the 3D view of R (the groups of atoms
surrounded by lines).The optimized geometries are shown in Figure (top views or z-axis views).
It can be found that all the polymerization (s-triazine)
units present a double (resonant ) pattern. The other views (either x-axis or y-axis view of each polymer of R because they are very similar)
are shown in Figure S1 (Supporting Information).
Figure 2
z-axis views of optimized structures of R at the B3LYP/cc-pvDZ level
(R = (C3N3)2, = 3–9).
z-axis views of optimized structures of R at the B3LYP/cc-pvDZ level
(R = (C3N3)2, = 3–9).In the molecule (C3N3)2 sequence, only the molecules whose n is less
than 10 can be optimized to the drum type (x-axis
or y-axis view) at the B3LYP/cc-pvDZ theory level.
The molecule (C3N3)2×10 (i.e., n = 10) is optimized to a shape of binoculars (bicylinder-type z-axis view, Figure S2 in the
Supporting Information), the molecule (C3N3)2×14 (n = 14) is optimized into a trinocular
tube viewed from the z axis (see Figure S3 in the Supporting Information) at the B3LYP/cc-pvDZ
theory level, and so on. This is the reason why only the molecules
(C3N3)2 (n = 3–9) are investigated in this work.As
mentioned above, the polymerization (heteroaromatic s-triazine core) units in (C3N3)2 are warped to a nonplanar, convex/concave
π-system by the steric repulsions of adjacent units and bond
tensions. To evaluate these effects, the R (Figure ) optimized
at the same level (i.e., B3LYP/cc-pvDZ) was used as the reference
molecule to compare the varieties of the molecular structure parameters.
Figure 3
Optimized
structure parameters of 2,4,6-tricyano-1,3,5-triazine
(R) at the B3LYP/cc-pvDZ level.
Optimized
structure parameters of 2,4,6-tricyano-1,3,5-triazine
(R) at the B3LYP/cc-pvDZ level.The seven polymers R (R = (C3N3)2, = 3–9) and the reference molecule
of R were successfully optimized at the restricted
B3LYP/cc-pvDZ theory levels. The real lowest vibrational frequencies
(see Table S2 in the Supporting Information)
of R and R indicate that the polymers and the R have stable equilibrium configurations. The optimized geometric
structures of R and R are shown in Figures and 3, respectively.
Bond Lengths
According to the classification
criteria for structural parameters set out in the previous section,
only the optimized bond lengths within a polymerization unit (the
first s-triazine core, all of which are carbon–nitrogen
bonds) and the bonds (all of which are C–C bonds) to the three
adjacent polymerization units are listed in Table . It can be found that the carbon–nitrogen
bonds in the polymerization unit (s-triazine ring
core) range from 1.3145 Å (C4=N5 of R) to 1.3585 Å (C2=N3 of R), which are typical lengths of the carbon–nitrogen double
bond (1.32 ± 0.02 Å) or carbon–nitrogen resonant
bond (, 1.36
± 0.02 Å). From the point of view of bond length, it can
be judged that the electron configuration of triazine, i.e., π-extended
configuration, is still reserved in each polymerization unit because
all the atoms in the ring are connected to their adjacent atoms by
alternate single–double bonds or a resonant bond. However,
the bonds on the polymerization unit have different lengths. Specifically,
the carbon–nitrogen double bonds on either side of atoms C2,
C4, and C6 are in groups on the first polymerization unit of high-symmetry
polymers R (D3), R (D5), and R (D6), except that of R (O of symmetry, the bond
lengths on the ring are exactly the same). Each bond is different
within one polymerization unit for low-symmetry polymers R (C2), R (D8), and R (C1). The drum-type polymers
can be divided into two parts, top and bottom drumheads (P and P in Figure of y-axis
view of polymer R), by the coordinate plane xOy. For convenience, the hexagon composed
of N1, C2, N3, C4, N5, and C6 is defined as U1. U2, U3, and U4 are the three polymerization
(s-triazine) units that are bonded to U1. U1, U2, and U4 are located
at the top part of a drum (P), and U3 is located at the bottom part of a drum (P). According to the symmetry principle, the effect of U2 and U4 on U1 is similar or the
same, while the effect of U3 on U1 is different
from that of U2 and U4 on U1. This results in the lengths of N1C2 and C2N3 (i.e., the carbon–nitrogen
double bond at both sides of atom C2) being similar to those of N1C6 and C6N5 but different from those of
N3C4 and C4N5 (see Table ). The lengths of N1C2 (or C2N3) and N1C6 (or N5C6) are slightly longer than
that of the carbon–nitrogen double bonds in R (1.3395 Å), while the length of N3C4 (or C4N5) is slightly shorter than
those of the carbon–nitrogen double bonds in R. That is, the s-triazine cores of the polymers
are transformed to nonregular hexagons because some bonds are lengthened
and some bonds are shortened. C4–C8″ between U1 and U3 is located between P and P. Both C2–C8′ (between U1 and U2) and C6–C8 (between U1 and U4) are the bonds in P. The lengths of the three carbon–carbon bonds are very close
to the length of the C–C single bond (about 1.54 Å) except
the lengths (1.5914 Å) of C2–C8′ and C6–C8
in R. The two extraordinary bond lengths
(1.5914 Å) are caused by the huge bond tension, which can be
offset partly by lengthening bond lengths. The bond tensions are relieved,
of course, not only by the lengthening of the bond between polymerization
units but also by the transverse deformation (from regular to irregular
hexagons) and longitudinal deformation (from planar to wavy undulating
or concave/convex rings) of the s-triazine unit.
Table 2
Optional List of Bond Lengths (in
Å) of R at the B3LYP/cc-pvDZ
Theory Level (R = (C3N3)2, = 3–9)
Figure 4
y view of the drum-shaped polymer R. P is the mirror unit of P with respect to the plane xOy. U2, U3, and U4 are the three
polymerization (s-triazine)
units that are bonded to the first unit U1.
y view of the drum-shaped polymer R. P is the mirror unit of P with respect to the plane xOy. U2, U3, and U4 are the three
polymerization (s-triazine)
units that are bonded to the first unit U1.
Bond Angles
Based on the same rule
as the optional list of bond lengths, only the bond angles of which
vertices are atoms on U1 are listed (Table ). There are six ∠N–C–N
and ∠C–N–C angles (bond angles inside of U1, denoted as BAset1) and six ∠N–C–C
(bond angle outside of U1, denoted as BAset2) of each polymer. The bond angle values of ∠N–C–N
and ∠C–N–C are listed in the first six rows (rows
1 to 6) and the bond angle values of ∠N–C–C are
listed in the last six rows (rows 7 to 12). Compared to the ∠C–N–C
angle of the planar s-triazine core in R (113.7°, see Figure ), the ∠C–N–C angles
of U1 are enlarged (greater than 113.7°) generally
except that of the ∠C2–N1–C6 angle (111.9°)
of U1 in R and ∠C2–N3–C4
angle (111.1°) of U1 in R. The ∠N–C–N angles are reduced (less than 126.3°,
see Figure ). The
sum of angles inside of the planar R core
is 126.3° × 3 + 113.7° × 3 = 720° (see the
bond angle values in Figure ), which is, as well known, the maximum value for any hexagon.
The sums of BAset1 (∠N–C–N and ∠C–N–C
angles) for R to R are 715.6°, 719.1°, 718.1°, 716.4°, 714.1°,
712.5°, and 713.9° (see row 13 of Table ), respectively. The sums of BAset1 are less than 720°, indicating that the s-triazine
units are distorted longitudinally from planar hexagons to spatial
ones due to the bond tensions and weak intramolecular interactions.
These results also help us confirm that the s-triazine
units in R are transformed
into wavy undulating or concave/convex rings. All the ∠N–C–C
angles (BAset2) are generally decreasing (greater than
116.8°) compared to that of R (116.8°,
see Figure ) except
the bond angles of ∠N1–C2–C8′ and ∠N1–C6–C8
in R to R. It can
be seen that the sums (rows 14 to 16 in Table ) of bond angles with the same carbon vertex
are less than 360°, indicating that the three bonds on a carbon
atom are also not coplanar.
Table 3
Optional List of
Bond Angles (in Degrees)
of R at the B3LYP/cc-pvDZ
Theory Level (R = (C3N3)2, = 3–9)
no.
bond angle
R3 (D3h)
R4 (Oh)
R5 (D5h)
R6 (D6h)
R7 (C2)
R8 (D8)
R9 (C1)
1
∠C2–N1–C6
111.9
114.7
114.6
113.9
113.4
113.2
113.3
2
∠C2–N3–C4
115.0
114.7
114.5
114.6
117.1
118.2
111.1
3
∠C4–N5–C6
115.0
114.7
114.5
114.6
112.2
111.4
119.6
4
∠N1–C2–N3
125.0
125.0
124.9
124.7
122.6
121.5
126.6
5
∠N3–C4–N5
123.7
125.0
124.7
123.9
123.1
122.4
122.6
6
∠N1–C6–N5
125.0
125.0
124.9
124.7
125.7
125.8
120.7
7
∠N1–C2–C8′
109.7
113.5
116.7
120.1
124.7
128.0
123.2
8
∠N3–C2–C8′
112.6
113.5
112.7
110.8
109.1
107.5
106.5
9
∠N3–C4–C8″
114.1
113.5
113.5
113.7
111.8
111.3
120.4
10
∠N5–C4–C8″
114.1
113.5
113.5
113.7
116.4
117.8
108.0
11
∠N1–C6–C8
109.7
113.5
116.7
120.1
122.1
124.2
131.0
12
∠N5–C6–C8
112.6
113.5
112.7
110.8
108.5
106.7
106.2
13
sum of inner angles
715.6
719.1
718.1
716.4
714.1
712.5
713.9
14
sum around C2
347.3
352.0
354.3
355.6
356.4
357.0
356.3
15
sum around C4
351.9
352.0
351.7
351.3
351.3
351.5
351.0
16
sum around C6
347.3
352.0
354.3
355.6
356.3
356.7
357.9
Dihedral Angles
In this paper, only
two types of dihedral angles (Table ) related to U1 are considered: one is
that the dihedral angles of all four vertices on the U1 are marked by ∠N–CN–C or ∠C–NC–N
(denoted as DAset1), and another is that the dihedral
angles with the C–C bond as the edge are marked by ∠N–CC–N
(denoted as DAset2). A dihedral angle is commonly denoted
as θ and has a range of 0° ≤ θ ≤ 180°
mathematically. The minus sign (or nothing) ahead of a value in Table indicates a dihedral
vector because the angle (θ) or supplementary angle (π–θ)
of the normal vector between a pair of half-planes is processed into
a dihedral angle chemically. Therefore, the minus sign ahead of the
dihedral angle should be ignored when only the size of the dihedral
angle is involved. In this work, the supplementary angle (180°
– θ) of a dihedral angle is considered as its dihedral
angle (acute angle) for the following discussion when a dihedral angle
is obtuse (θ > 90°). For example, ∠N1–C2C8′–N9′
in R is taken as 36.0° (the calculated
θ = 144.0°, see row 8 in Table ). For an individual polymer, the six dihedral
angles in DAset1 are variant except that of R, in which the six dihedral angles are all 7.9°.
Since the four vertices that make up the dihedral angle are also the
vertices of the same hexagon (U1), the size of the dihedral
angle represents the fact that four atoms are not coplanar, and hence,
the bonds between them fluctuate. The greater the size, the greater
the degree of deviation from the bisector of the dihedral angle constituted
by the four vertices. The maximum dihedral angle ∠N3–C4N5–C6
(θ =29.1° in R) indicates maximum
fluctuation of the three continuous bonds of N3–C4, C4–N5,
and N5–C6. It can be also concluded that the pan class="Chemical">s-triazine units are all undulating rings in R. The dihedral angle, such as ∠N3–C4N5–C6,
can also be taken as the inclination angle of N3–C4 to the
plane ΔC4N5C6 or N5–C6 to the plane ΔC3N4C5. Surprisingly,
N3–C4, C4–N5, and N5–C6 are resonant bonds (, see Figure ) with a large inclination angle (29.1°)
of N3C4 to the
plane ΔC4N5C6 or N5C6 to the plane ΔC3N4C5. The studies on the presence
of large dihedral angles of inner aromatic rings, such as inside of U1, have not been reported. Although Itami et al. recently
reported a large dihedral angle (34.5°) in corannulenes in their
work,[13f] the four vertices (∠b–c–d–e
= 34.5° in Table 1 of ref (13f)) of this large dihedral angle are respectively
located at three ortho-fused benzene rings instead
of an individual benzene ring.
Table 4
Optional List of
Dihedral Angles (in
Degrees) of R at the B3LYP/cc-pvDZ
Theory Level (R = (C3N3)2, = 3–9)
no.
dihedral angle
R3 (D3h)
R4 (Oh)
R5 (D5h)
R6 (D6h)
R7 (C2)
R8 (D8)
R9 (C1)
1
∠C6–N1C2–N3
–23.8
7.9
–1.9
–6.4
–13.9
–16.5
1.4
2
∠C2–N1C6–N5
23.8
–7.9
1.9
6.4
0.7
–1.8
15.0
3
∠N1–C2N3–C4
12.1
–7.9
–6.3
–6.1
6.4
11.5
–20.9
4
∠C2–N3C4–N5
2.0
7.9
16.0
20.8
16.0
13.5
26.0
5
∠N3–C4N5–C6
–2.0
–7.9
–16.0
–20.8
–27.1
–29.1
–12.2
6
∠C4–N5C6–N1
–12.1
7.9
6.3
6.1
18.5
23.4
–10.4
7
∠N1–C2C8′–N7′
0.0
0.0
154.8
0.0
9.2
13.8
–34.1
8
∠N1–C2C8′–N9′
144.0
150.5
0.0
157.7
168.9
174.3
132.6
9
∠N3–C2C8′–N7′
144.0
150.5
0.0
157.7
149.7
146.7
166.2
10
∠N3–C2C8′–N9′
0.0
0.0
154.8
0.0
9.9
13.7
–27.1
11
∠N3–C4C8″–N7″
149.8
150.5
150.0
149.1
135.4
130.3
173.1
12
∠N3–C4C8″–N9″
0.0
0.0
0.0
0.0
–13.4
–18.7
25.3
13
∠N5–C4C8″–N7″
0.0
0.0
0.0
0.0
–13.5
–18.7
25.1
14
∠N5–C4C8″–N9″
149.8
150.5
150.0
149.1
162.3
167.7
–122.6
15
∠N1–C6C8–N7
144.0
0.0
0.0
0.0
8.9
13.8
–18.8
16
∠N1–C6C8–N9
0.0
150.5
154.8
157.7
150.0
146.7
–176.3
17
∠N5–C6C8–N7
0.0
150.5
154.8
157.7
168.7
174.3
144.2
18
∠N5–C6C8–N9
144.0
0.0
0.0
0.0
9.7
13.7
–13.3
The bonds between the polymerization
units are optimized to single
C–C bonds at the B3LYP/cc-pvDZ level. There are four independent
dihedral angles around each C–C bond that act as the edge of
dihedral angles. This kind of dihedral angle (DAset2)
varies greatly. Some of them are zero (0°), such as ∠N3–C4C8″–N9″,
∠N5–C4C8″–N7″, etc., in R, R, R, and R, indicating that the atoms N3, C4,
C8″, N9″, and N7″ are coplanar or indicating
that the pairs of half-planes ΔN3C4C8″ and ΔC4C8″N9″
and those of half-planes ΔN5C4C8″ and ΔC4C8″N7″
have the same twisting angle and twisting orientation. Some of them
are very large (for ∠N5–C4C8″–N9″,
θ = 180°–122.6° = 57.4°), indicating that
the two bonds N5–C4 and C8″–N9″, which
should have been in the same plane, are severely distorted by bond
tensions and steric repulsions. Polymers with high symmetry (R, R, R, and R) have four coplanar vertices
of dihedral angles (∠N–CC–N = 0°) with C–C
edges, while polymers with low symmetry or no symmetry (R, R, and R) do not (∠N–CC–N ≠ 0° in DAset2).
NBO Analyses
NBO
analysis indicates
that all the atoms in the polymers are sp2-hybridized at
the B3LYP/cc-pvDZ theory level and two kinds of orbitals (σ
and π) are obtained. For comparison, NBO analysis of the reference
molecule R is also carried out at the same
theory level. The numbers of σ- and π-orbitals of R are listed in Table . It should be noted that some
π-orbitals (5, 1, and 1 in R, R, and R, respectively)
are determined by NBO to be antibonding lone-pair orbitals (LP*) of
carbon atoms. Due to the resonance effect, these electron pairs are
mainly concentrated on the side of the C atom in the resonance structure
of NC and thus
allocated to the C atom by NBO as a lone pair. This lone pair can
only occupy LP* orbitals because the valence bonds of these carbon
atoms are already fulfilled and the LP* energies of the carbon atoms
are closer to the π-orbitals. Whether the electron pair of the
resonance structure of NC is partitioned by NBO into π electrons or into
lone-pair electrons does not affect the recognition of the carbon–nitrogen
as double (resonant) bonds. Based on this reasoning, the numbers of
the σ-bond obtained from NBO are equal to the total numbers
of σC–C and resonant covalent bonds of NC (see Figure and Table ) obtained from structure optimizations.
Table 5
Numbers of σ and π Bonding
Orbitals of R at the B3LYP/cc-pvDZ
Theory Level (R = (C3N3)2, = 3–9)
bonding orbital
R3 (D3h)
R4 (Oh)
R5 (D5h)
R6 (D6h)
R7 (C2)
R8 (D8)
R9 (C1)
σ
45
60
75
90
105
120
135
π
13 + 5a
24
29 + 1a
36
42
48
53 + 1a
The resonance structure of NC is partitioned by NBO into
lone-pair electrons of the C atom instead of π electrons.
The resonance structure of NC is partitioned by NBO into
lone-pair electrons of the C atom instead of π electrons.In NBO analyses, the delocalized
resonant double NC bonds are translated into
alternate single–double bonds, which are characterized by localized
Lewis’ configurations of a shared electronic pair. The localized
double bonds (N=C) are only distributed in the polymerization
units like U1, U2, U3, and
so on. Each unit has three localized N=C double bonds (as an
example, all the 126 bonding orbitals are listed in Table S3 of the Supporting Information for reference). The
σC–N and πC–N bonds
can be clearly distinguished by the values of electron occupancies
(Table ) and the energies
(Table ) of bonding
orbitals. It is well known that the energy of a σ-orbital (here,
about −0.86 au for σC–N, see Table ) is lower than that
of its π-orbital (all about −0.36 au for πC–N). The maximum electron occupancy of any bonding
orbital is 2.0e. A perfectly localized orbital would
have an electron occupancy of 2.0e. The number of
delocalized electrons can be measured simply by 2.0e minus the orbital occupancy. It is common sense that the delocalization
of a π-orbital is greater than that of a σ-orbital. This
means that the occupancy of a π-orbital is lower than that of
a σ-orbital. Taking the two molecular orbitals between atoms
N1 and C6 in R as an example, the one with
an electron occupancy close to 2.0e (1.978e) is defined as a σ-orbital (i.e., σN1–C6), while the one with a small electron occupancy (1.655e) is defined as a π-orbital (i.e., πC–N) by NBO. The delocalized electron is filled in its own antibonding
orbital. For example, the occupancy of antibonding π-orbital
(i.e., π*C–N) is about 0.365e (see Table ). The
occupancies of all σC–N and σC–C orbitals are greater than 1.96e, while those of
all πC–N orbitals are less than 1.69e. Comparing the orbital occupancies of σC–N (1.970e–1.983e) in U1 and that (1.982e) in the s-triazine core of R and the orbital occupancies
of πC–N (1.625e–1.697e) in U1 and that (1.657e)
in the s-triazine core of R, it is found that the occupancy differences between the same orbital
type (σC–N, σC–C,
and πC–N) are very small. However, there exist
large difference values (0.045–0.065 au) of orbital energies
between the orbitals in U1 (−0.89505 to −0.84614
au for σ-orbitals and −0.36051 to −0.34649 au
for π-orbitals) and the s-striazine core of R (−0.92662 au for σ-orbitals and
−0.39605 au for π-orbitals). Whether it is a σ-orbital
or π-orbital, the orbital energies of U1 are always
greater than those of the corresponding orbitals in the s-striazine core of R. The increase in orbital
energy of the polymerization unit is undoubtedly caused by bond tensions,
which also led to the distortion of the rigid plane of the s-triazine monomer into undulating configration of the polymerization
unit.
Table 6
Occupancies (in e) of σ-,
π-, and π*-Orbitals of R at the B3LYP/cc-pvDZ Theory Level (R = (C3N3), = 3–9)a
orbital
R3 (D3h)
R4 (Oh)
R5 (D5h)
R6 (D6h)
R7 (C2)
R8 (D8)
R9 (C1)
RM
σN1–C2
1.978
1.982
1.983
1.984
1.984
1.984
1.983
1.982
σN1–C6
1.983
1.983
1.984
1.984
1.984
1.983
1.985
1.982
σC2–N3
1.983
1.983
1.983
1.981
1.982
1.982
1.977
1.982
σN3–C4
1.981
1.982
1.982
1.981
1.979
1.977
1.984
1.982
σC4–N5
1.983
1.983
1.983
1.983
1.984
1.983
1.976
1.982
σN5–C6
1.970
1.982
1.982
1.981
1.978
1.977
1.981
1.982
πN1–C6
1.655
1.647
1.655
1.661
1.685
1.697
1.695
1.657
πC2–N3
1.655
1.647
1.654
1.661
1.687
1.693
1.625
1.657
πC4–N5
1.655
1.647
1.637
1.631
1.627
1.628
1.686
1.657
σC2–C8′
1.963
1.969
1.969
1.968
1.968
1.968
1.967
1.979
σC4–C8″
1.962
1.969
1.967
1.967
1.965
1.964
1.964
1.979
σC6–C8
1.963
1.969
1.969
1.969
1.968
1.968
1.970
1.979
π*N1–C6
0.367
0.354
0.364
0.372
0.357
0.353
0.354
0.371
π*C2–N3
0.366
0.354
0.354
0.355
0.355
0.360
0.365
0.371
π*C4–N5
0.376
0.354
0.352
0.353
0.354
0.360
0.364
0.371
Σπ
4.965
4.941
4.946
4.953
4.999
5.018
5.006
4.971
Σπ*
1.109
1.062
1.070
1.08
1.066
1.073
1.083
1.113
Σπ + Σπ*
6.074
6.003
6.016
6.033
6.065
6.091
6.089
6.084
R is the
reference molecule 2,4,6-tricyano-1,3,5-triazine.
Table 7
Energies (in au)
of R at the B3LYP/cc-pvDZ
Theory Level (R = (C3N3)2, = 3–9)a
orbital
R3 (D3h)
R4 (Oh)
R5 (D5h)
R6 (D6h)
R7 (C2)
R8 (D8)
R9 (C1)
RM
σN1–C2
–0.87244
–0.87731
–0.87623
–0.87429
–0.86862
–0.86681
–0.87590
–0.92662
σN1–C6
–0.86551
–0.87585
–0.87560
–0.87395
–0.87871
–0.87989
–0.86954
–0.92662
σC2–N3
–0.88784
–0.87585
–0.86649
–0.85983
–0.86517
–0.86783
–0.84614
–0.92662
σN3–C4
–0.87244
–0.87731
–0.88388
–0.88916
–0.89070
–0.89160
–0.88000
–0.92662
σC4–N5
–0.86551
–0.87585
–0.88312
–0.88871
–0.88541
–0.88261
–0.89505
–0.92662
σN5–C6
–0.88784
–0.87731
–0.86852
–0.86225
–0.85149
–0.84664
–0.86994
–0.92662
πN1–C6
–0.35254
–0.35302
–0.34896
–0.34681
–0.34790
–0.34895
–0.34785
–0.39605
πC2–N3
–0.35254
–0.35302
–0.35554
–0.35747
–0.36051
–0.36001
–0.34649
–0.39605
πC4–N5
–0.35254
–0.35302
–0.35087
–0.34981
–0.34882
–0.34805
–0.35792
–0.39605
σC2–C8′
–0.63801
–0.66467
–0.67861
–0.68035
–0.68246
–0.68077
–0.68013
–0.79818
σC4–C8″
–0.67602
–0.66467
–0.66016
–0.65727
–0.66009
–0.66388
–0.66176
–0.79818
σC6–C8
–0.63801
–0.66467
–0.67936
–0.68121
–0.68245
–0.68081
–0.67132
–0.79818
π*N1–C6
–0.05067
–0.04146
–0.04247
–0.04399
–0.04707
–0.04874
–0.04874
–0.09069
π*C2–N3
–0.04158
–0.04146
–0.03599
–0.04437
–0.03016
–0.03138
–0.03850
–0.09069
π*C4–N5
–0.03590
–0.04146
–0.04435
–0.03269
–0.04093
–0.03928
–0.03265
–0.09069
R is the
reference molecule 2,4,6-tricyano-1,3,5-triazine.
R is the
reference molecule 2,4,6-tricyano-1,3,5-triazine.R is the
reference molecule 2,4,6-tricyano-1,3,5-triazine.U1 is a nonplanar π-extended
ring because it
is characterized by resonance structures and alternate single–double
bonds like the pan class="Chemical">s-triazine core of R. Σπ is the sum of occupancies of π-orbitals
and Σπ* is the sum of occupancies of π*-orbitals.
At a macrolevel, the term Σπ + Σπ* is the
conjugate electron number of U1. The value of the term
Σπ + Σπ* can be expressed as 6 + x, where x is a very small number and mainly from
the contribution of lone pairs whether it is for nonlanar U1 or for the rigid-planar s-triazine core of R. Macroscopically, the conjugate electron number
of U1 is surely going to be 6, which satisfies Huckel’s
rule (i.e., with aromaticity). That is, U1 is a heterocyclic
aromatic unit like the s-triazine core of R. By that analogy, each polymerization unit of R is a nonplanar s-triazine core.
Molecular Orbital Diagram
The deformation
of the s-triazine unit in R can be observed by comparing their molecular orbital
diagrams with the monomer s-triazine or the planar
benzene (introduced here for reference). There are many types of orbitals,
including bonding orbitals, antibonding orbitals, core orbitals, lone-pair
orbitals, vacant orbitals, and multiple orbitals for each type of
polymer. In view of this, only the diagrams of the lowest-energy σ-orbital
(denoted as σLEO) in R (Figure ) and R/benzene (Figure ) are provided. Since there are only carbon
and nitrogen atoms in R,
their σLEO number can be easily determined by adding
the number of atoms to one. The σLEO numbers are
37, 49, 61, 73, 85, 97, and 109 for R to R, respectively. As can be seen in Figure , the σLEO of R is mainly composed
of the σ-orbital in each s-triazine unit (here,
it is denoted as σring) except that of R, in which some σring’s contribute
little to the σLEO. In terms of the pattern of σring, it is different from the σLEO of R/benzene. The σLEO’s
of R/benzene are pie-shaped, while the σring is double sunken pie-shaped. Whether it is R or R/benzene,
all the atoms on the six-membered ring are sp2-hybridized.
The difference in orbital patterns is because the overlap direction
of sp2 hybrid orbitals has been changed in R. On six-membered rings of R/benzene, sp2 hybrid orbitals of adjacent
atoms lie in the same plane and overlap in the head-to-head mode (and
the largest overlapping mode) to form a bond. In R, due to the tension of the polymerization
units, the sp2 hybrid orbitals of adjacent atoms do not
overlap to form a bond in the same plane but with an offset angle
in the normal direction of the s-triazine plane.
On the one hand, the undulating overlapping mode of the sp2 hybrid orbital twists the pattern of σring into
a double sunken pie shape. On the other hand, the overlapping degree
of the sp2 hybrid orbitals in σLEO is
reduced, resulting in a decrease in bond strength. This is consistent
with the change in orbital energy.
Figure 5
z view diagrams of the
lowest-energy σ-orbital
(labeled by MO and number) in R at the B3LYP/cc-pvDZ theory level (R = (C3N3)2, = 3–9).
Figure 6
x view
and z view diagrams of
the lowest-energy σ-orbital (labeled by MO and number) in R/benzene at the B3LYP/cc-pvDZ theory level.
z view diagrams of the
lowest-energy σ-orbital
(labeled by MO and number) in R at the B3LYP/cc-pvDZ theory level (R = (C3N3)2, = 3–9).x view
and z view diagrams of
the lowest-energy σ-orbital (labeled by MO and number) in R/benzene at the B3LYP/cc-pvDZ theory level.Unlike σLEO, the lowest π-orbital
is difficult
to be located. Any molecular orbital, including the π-orbital,
is the superposition of orbitals with similar energies within the
molecule. Just as the σ-orbital of the molecule discussed above
being not the superposition of two hybrid orbitals in the head-to-head
mode, two p-orbitals of adjacent atoms
do not overlap in the shoulder-to-shoulder (parallel) mode but overlap
at a certain angle (or called dislocation superposition). This overlapping
mode results in the positive phase (plus isovalue) and negative phase
(negative isovalue) canceling each other out and a lot of nodes in
the molecular orbital diagram (Figure ). In the polymer, there is no π-extended orbital
shaped as sandwich biscuits (the lowest-energy π-orbital, denoted
πLEO, Figure ) similar to the R/pan class="Chemical">benzene. Even
as part of the π-orbital (denoted as πring),
the patterns of πring are quite different from the
πLEO of R/benzene. The orbital
diagram shown in Figure is the representative orbital, which is not necessarily the πLEO of the polymers, selected from the various orbitals of
a polymer.
Figure 7
Diagrams of the selected (not necessarily the lowest-energy) π-orbital
(labeled by MO and number) in R at the B3LYP/cc-pvDZ theory level (R = (C3N3)2, = 3–9).
Figure 8
x view
and z view diagrams of
the lowest-energy orbital (labeled by MO and number) in R/benzene at the B3LYP/cc-pvDZ theory level.
Diagrams of the selected (not necessarily the lowest-energy) π-orbital
(labeled by MO and number) in R at the B3LYP/cc-pvDZ theory level (R = (C3N3)2, = 3–9).x view
and z view diagrams of
the lowest-energy orbital (labeled by MO and number) in R/benzene at the B3LYP/cc-pvDZ theory level.As can be seen from the selected molecular orbital diagrams,
all
the polymerization units have a large π-extended structure like
the s-triazine core of R; the orbitals (both σ-orbital and π-orbital) of all
the polymerization units are wavy undulating configurations. From
the molecular orbital diagram, it is confirmed again that the polymerization
unit is a nonplanar (warped) s-triazine unit.
AIM Bonding Analysis
AIM analysis
shows that the number of the BCPs with ∇2ρ
< 0 is equal to that of chemical bonds obtained from structural
optimization and the σ-orbitals obtained from the NBO. Only
a small amount of BCPs with ∇2ρ > 0 (i.e.,
van der Waals force or dispersion force) was found in the three polymers R, R, and R (see Table S4 of the Supporting
Information). The van der Waals forces occur between two nitrogen
atoms at the side face of a drum (Figure S4 of the Supporting Information). Take R as
an example, the eight van der Waals forces (dispersions) are labeled
as “V”. The lengths of bond paths (approximately the
distance between the atoms) range from 2.9 to 3.2 Å except that
of N5···N9 (2.316 Å) and N49···N57
(2.315 Å) in R. The electron densities
at this kind of BCP range from 0.008e/bohr[2] to 0.014e/bohr[2] except those of N5···N9 (0.034e/bohr[2]) and N49···N57 (0.035e/bohr[2]) in R. Such long bond paths and small electron densities mean that
the interaction (van der Waals force) between the atoms is very weak.
These results indicate that weak intramolecular interactions contributed
little to the stability of the molecule at the B3LYP/cc-pvDZ level.
Heats of Formation (HOF)
Heat of
formation (HOF, commonly denoted as ΔHf) is an important measure of molecular stability. The HOF
values of the polymers are obtained by our previously developed method[21] for estimating the approximate HOF of large-sized
compounds at the level of B3LYP/cc-pvDZ (Table ). As far as the HOF criterion is concerned,
the relative stabilities of the polymers cannot be estimated because
each polymer molecule contains a different number of atoms. It is
assumed that nR can self-polymerize
to form R by the following
reactionwhere
Table 8
Total Energies E0 (in
au, Including Zero-Point Energy Corrections), the Enthalpies Hf (in au, Including Zero-Point Energy Corrections),
and the ΔHf (in kcal mol–1) of R and R at the B3LYP/cc-pvDZ Theory Level (R =
(C3N3)2, = 3–9)a
molecule
Eo
H298
ΔHf
ΔΔHf
C6N6 (RM)
–557.028290
–557.017860
165.7
R3
–1670.737502
–1670.717901
707.8
210.7
R4
–2227.924965
–2227.898752
771.2
108.4
R5
–2785.009094
–2784.975426
900.1
71.6
R6
–3342.004024
–3341.962935
1084.8
90.6
R7
–3898.936043
–3898.887923
1308.8
148.9
R8
–4455.836558
–4455.781344
1552.6
227.0
R9
–5012.720499
–5012.657440
1807.3
316.0
R is the
reference molecule 2,4,6-tricyano-1,3,5-triazine.
R is the
reference molecule 2,4,6-tricyano-1,3,5-triazine.ΔΔHf is the change in enthalpy
from the reactant R to the product R. Obviously, given the same
number of atoms, the smaller the value of ΔΔHf, the smaller the HOF per product R. According to this rule, the order of stability
of the polymer is R > R > R > R > R > R > R. This order is consistent with the conclusion
that the bond tensions in R and R are low and the bond tensions in R and R are high.
Conclusions
The computational and theoretical results of
molecules (C3N3)2 (n =
3–9) indicate the following: (1) The geometric structures are
cages and drum-shaped. The total number of bonds obtained from structure
optimizations, the σ-orbitals obtained from NBO analysis, and
the BCPs with ∇2ρ < 0 obtained from AIM
analysis are equal. (2) All the atoms in polymers are sp2-hybridized and the polymerization units maintain the resonance (π-extended)
structure of s-triazine. The bond between polymerization
units is a carbon–carbon single bond (C–C), which is
not in the plane of NCN, although all the atoms are sp2-hybridized. (3) The
out-of-plane tensions of the C–C bonds cause the core of triazine
to be deformed to a wavy undulating (nonplanar π-extended) ring.
(4) The twist angle, i.e., dihedral angle of two planes consisting
of four consecutive atoms in a resonant structure, can reach up to
29.1°. (5) The warped π-system can be found not only in
helicenes and corannulenes, in which the benzene units are ortho-fused, but also in polymers like (C3N3)2 with heterocyclic aromatic
hydrocarbonpolymerization units bonding by two carbon atoms. (6)
The results of this study broaden the research field of helicenes
and corannulenes and help organic chemists and material chemists synthesize
this kind of compound with structural characteristics.
Computational Methods
All calculations were carried out
using the GAUSSIAN09 version
C.01 program package.[22] The geometry structures
and harmonic vibrational frequencies of R were mainly optimized using the B3LYP method with Dunning’s
cc-pvDZ basis set. The convergence criterion of the SCF iteration
algorithm was set to 10–8 during geometry optimization.
No imaginary frequency (see Table S2 in
the Supporting Information) was found for all the structures at the
B3LYP/cc-pvDZ theory level, indicating that all of the structures
optimized are local minima on the potential energy surface. The optimized
geometries are shown in Figure (top views or z-axis views). It can be found
that all the polymerization pan class="Chemical">(s-triazine) units present
a double (resonant ) pattern. The other views (either x-axis or y-axis view of each polymer of R because they are very similar) are shown in Figure S1 (Supporting Information).
One
of the main reasons for choosing the B3LYP method with Dunning’s
cc-pvDZ basis set as the computational level of the molecules in this
sequence (for example, n = 7, 8, 9, 10, 14, 18 of R) is that the structures of
the larger molecules can also be optimized successfully at this computational
level. In R, the s-triazine units are distorted (with a warped π-system)
by external forces. These forces may be bond tensions or intramolecular
dispersion forces. The role of bond tension is discussed in the next
section. Quantitative or qualitative analysis of intramolecular dispersion
forces needs to use methods with functionals of long-range correction
(such as Head–Gorden’s functionals wB97XD) and basis
sets with diffuse functions (such as Dunning’s aug-cc-pvDZ)
since the B3LYP functional does not address weak intermolecular interactions
well.[23] However, using MP2 or wB97XD methods
with the aug-cc-pvDZ basis set, the optimizations are either extremely
time-consuming or a convergence failure (see Table S5 in the Supporting Information). Even using the B3LYP method
with the aug-cc-pvDZ basis set, only molecules R and R in this sequence can be successfully
optimized. This means that it is impossible to optimize all of R by using any method with diffuse
functions’ basis sets (including the common basis set of 6-31+G(d)).
Popelier in his work[24] pointed out that
the model used to obtain the electronic density and, hence, the dispersion
interaction results, Atoms In Molecule (AIM),[25] is relatively independent of the choice of the functionals as well
as the basis sets. The interpretation of the charge density toward
chemical concepts is independent of the method by which it has been
acquired.[26] In our previous work,[11,21] the B3LYP/cc-pvDZ theory level is chosen to optimize the relative
larger-sized molecules and the results are reliable. This is the reason
why the theory level of B3LYP/cc-pvDZ in combination with AIM and
NBO[27] is used to study this series of molecules
in this work.An attempt is made to find out whether there are
weak interactions
(van der Waals forces or dispersion forces) in the seven cage polymers.
The AIM 2000 program package, based on AIM theory of Bader et al.,[24,25] is designed to yield valuable information such as the energy of
an atom,[27,28] the electronic density (ρ(r)) of the critical points, etc. Each point lying between
bonded pair atoms is called a bond critical point (BCP) where the
Laplace of ∇2ρ is used to determine whether
the charge of the region is locally depleted (∇2ρ > 0) or concentrated (∇2ρ <
0).
The former is typically relevant to weak interactions between atoms,
whereas the latter is used to characterize covalent bonds.
Authors: David Schweinfurth; Michal Zalibera; Michael Kathan; Chengshuo Shen; Marcella Mazzolini; Nils Trapp; Jeanne Crassous; Georg Gescheidt; François Diederich Journal: J Am Chem Soc Date: 2014-09-03 Impact factor: 15.419
Authors: Xiao-Ye Wang; Thomas Dienel; Marco Di Giovannantonio; Gabriela Borin Barin; Neerav Kharche; Okan Deniz; José I Urgel; Roland Widmer; Samuel Stolz; Luis Henrique De Lima; Matthias Muntwiler; Matteo Tommasini; Vincent Meunier; Pascal Ruffieux; Xinliang Feng; Roman Fasel; Klaus Müllen; Akimitsu Narita Journal: J Am Chem Soc Date: 2017-03-27 Impact factor: 15.419
Authors: Brian D Steinberg; Edward A Jackson; Alexander S Filatov; Atsushi Wakamiya; Marina A Petrukhina; Lawrence T Scott Journal: J Am Chem Soc Date: 2009-08-05 Impact factor: 15.419