| Literature DB >> 32478252 |
Bing He1, Hongwei Zhou1.
Abstract
A nonplanar extended π-system can be found not only in compounds formed by multiple ortho-fused benzenes, such asEntities:
Year: 2020 PMID: 32478252 PMCID: PMC7254778 DOI: 10.1021/acsomega.0c00850
Source DB: PubMed Journal: ACS Omega ISSN: 2470-1343
Figure 1Renumbered atoms and their corresponding original serial numbers in the 3D view of R (the groups of atoms surrounded by lines).
Renumbered Atoms and Their Corresponding Original Serial Numbers in R (R = (C3N3)2, = 3–9)
| polymer | N7′ | C8′ | N9′ | N7″ | C8″ | N9″ |
|---|---|---|---|---|---|---|
| 21 | 22 | 23 | 25 | 26 | 27 | |
| 21 | 22 | 23 | 25 | 26 | 27 | |
| 27 | 28 | 29 | 31 | 32 | 33 | |
| 31 | 36 | 35 | 37 | 38 | 39 | |
| 67 | 72 | 71 | 31 | 32 | 33 | |
| 67 | 72 | 71 | 31 | 32 | 33 | |
| 67 | 72 | 71 | 31 | 32 | 33 |
Figure 2z-axis views of optimized structures of R at the B3LYP/cc-pvDZ level (R = (C3N3)2, = 3–9).
Figure 3Optimized structure parameters of 2,4,6-tricyano-1,3,5-triazine (R) at the B3LYP/cc-pvDZ level.
Optional List of Bond Lengths (in Å) of R at the B3LYP/cc-pvDZ Theory Level (R = (C3N3)2, = 3–9)
Figure 4y view of the drum-shaped polymer R. P is the mirror unit of P with respect to the plane xOy. U2, U3, and U4 are the three polymerization (s-triazine) units that are bonded to the first unit U1.
Optional List of Bond Angles (in Degrees) of R at the B3LYP/cc-pvDZ Theory Level (R = (C3N3)2, = 3–9)
| no. | bond angle | |||||||
|---|---|---|---|---|---|---|---|---|
| 1 | ∠C2–N1–C6 | 111.9 | 114.7 | 114.6 | 113.9 | 113.4 | 113.2 | 113.3 |
| 2 | ∠C2–N3–C4 | 115.0 | 114.7 | 114.5 | 114.6 | 117.1 | 118.2 | 111.1 |
| 3 | ∠C4–N5–C6 | 115.0 | 114.7 | 114.5 | 114.6 | 112.2 | 111.4 | 119.6 |
| 4 | ∠N1–C2–N3 | 125.0 | 125.0 | 124.9 | 124.7 | 122.6 | 121.5 | 126.6 |
| 5 | ∠N3–C4–N5 | 123.7 | 125.0 | 124.7 | 123.9 | 123.1 | 122.4 | 122.6 |
| 6 | ∠N1–C6–N5 | 125.0 | 125.0 | 124.9 | 124.7 | 125.7 | 125.8 | 120.7 |
| 7 | ∠N1–C2–C8′ | 109.7 | 113.5 | 116.7 | 120.1 | 124.7 | 128.0 | 123.2 |
| 8 | ∠N3–C2–C8′ | 112.6 | 113.5 | 112.7 | 110.8 | 109.1 | 107.5 | 106.5 |
| 9 | ∠N3–C4–C8″ | 114.1 | 113.5 | 113.5 | 113.7 | 111.8 | 111.3 | 120.4 |
| 10 | ∠N5–C4–C8″ | 114.1 | 113.5 | 113.5 | 113.7 | 116.4 | 117.8 | 108.0 |
| 11 | ∠N1–C6–C8 | 109.7 | 113.5 | 116.7 | 120.1 | 122.1 | 124.2 | 131.0 |
| 12 | ∠N5–C6–C8 | 112.6 | 113.5 | 112.7 | 110.8 | 108.5 | 106.7 | 106.2 |
| 13 | sum of inner angles | 715.6 | 719.1 | 718.1 | 716.4 | 714.1 | 712.5 | 713.9 |
| 14 | sum around C2 | 347.3 | 352.0 | 354.3 | 355.6 | 356.4 | 357.0 | 356.3 |
| 15 | sum around C4 | 351.9 | 352.0 | 351.7 | 351.3 | 351.3 | 351.5 | 351.0 |
| 16 | sum around C6 | 347.3 | 352.0 | 354.3 | 355.6 | 356.3 | 356.7 | 357.9 |
Optional List of Dihedral Angles (in Degrees) of R at the B3LYP/cc-pvDZ Theory Level (R = (C3N3)2, = 3–9)
| no. | dihedral angle | |||||||
|---|---|---|---|---|---|---|---|---|
| 1 | ∠C6–N1C2–N3 | –23.8 | 7.9 | –1.9 | –6.4 | –13.9 | –16.5 | 1.4 |
| 2 | ∠C2–N1C6–N5 | 23.8 | –7.9 | 1.9 | 6.4 | 0.7 | –1.8 | 15.0 |
| 3 | ∠N1–C2N3–C4 | 12.1 | –7.9 | –6.3 | –6.1 | 6.4 | 11.5 | –20.9 |
| 4 | ∠C2–N3C4–N5 | 2.0 | 7.9 | 16.0 | 20.8 | 16.0 | 13.5 | 26.0 |
| 5 | ∠N3–C4N5–C6 | –2.0 | –7.9 | –16.0 | –20.8 | –27.1 | –29.1 | –12.2 |
| 6 | ∠C4–N5C6–N1 | –12.1 | 7.9 | 6.3 | 6.1 | 18.5 | 23.4 | –10.4 |
| 7 | ∠N1–C2C8′–N7′ | 0.0 | 0.0 | 154.8 | 0.0 | 9.2 | 13.8 | –34.1 |
| 8 | ∠N1–C2C8′–N9′ | 144.0 | 150.5 | 0.0 | 157.7 | 168.9 | 174.3 | 132.6 |
| 9 | ∠N3–C2C8′–N7′ | 144.0 | 150.5 | 0.0 | 157.7 | 149.7 | 146.7 | 166.2 |
| 10 | ∠N3–C2C8′–N9′ | 0.0 | 0.0 | 154.8 | 0.0 | 9.9 | 13.7 | –27.1 |
| 11 | ∠N3–C4C8″–N7″ | 149.8 | 150.5 | 150.0 | 149.1 | 135.4 | 130.3 | 173.1 |
| 12 | ∠N3–C4C8″–N9″ | 0.0 | 0.0 | 0.0 | 0.0 | –13.4 | –18.7 | 25.3 |
| 13 | ∠N5–C4C8″–N7″ | 0.0 | 0.0 | 0.0 | 0.0 | –13.5 | –18.7 | 25.1 |
| 14 | ∠N5–C4C8″–N9″ | 149.8 | 150.5 | 150.0 | 149.1 | 162.3 | 167.7 | –122.6 |
| 15 | ∠N1–C6C8–N7 | 144.0 | 0.0 | 0.0 | 0.0 | 8.9 | 13.8 | –18.8 |
| 16 | ∠N1–C6C8–N9 | 0.0 | 150.5 | 154.8 | 157.7 | 150.0 | 146.7 | –176.3 |
| 17 | ∠N5–C6C8–N7 | 0.0 | 150.5 | 154.8 | 157.7 | 168.7 | 174.3 | 144.2 |
| 18 | ∠N5–C6C8–N9 | 144.0 | 0.0 | 0.0 | 0.0 | 9.7 | 13.7 | –13.3 |
Numbers of σ and π Bonding Orbitals of R at the B3LYP/cc-pvDZ Theory Level (R = (C3N3)2, = 3–9)
| bonding orbital | |||||||
|---|---|---|---|---|---|---|---|
| σ | 45 | 60 | 75 | 90 | 105 | 120 | 135 |
| π | 13 + 5 | 24 | 29 + 1 | 36 | 42 | 48 | 53 + 1 |
The resonance structure of NC is partitioned by NBO into lone-pair electrons of the C atom instead of π electrons.
Occupancies (in e) of σ-, π-, and π*-Orbitals of R at the B3LYP/cc-pvDZ Theory Level (R = (C3N3), = 3–9)a
| orbital | ||||||||
|---|---|---|---|---|---|---|---|---|
| σN1–C2 | 1.978 | 1.982 | 1.983 | 1.984 | 1.984 | 1.984 | 1.983 | 1.982 |
| σN1–C6 | 1.983 | 1.983 | 1.984 | 1.984 | 1.984 | 1.983 | 1.985 | 1.982 |
| σC2–N3 | 1.983 | 1.983 | 1.983 | 1.981 | 1.982 | 1.982 | 1.977 | 1.982 |
| σN3–C4 | 1.981 | 1.982 | 1.982 | 1.981 | 1.979 | 1.977 | 1.984 | 1.982 |
| σC4–N5 | 1.983 | 1.983 | 1.983 | 1.983 | 1.984 | 1.983 | 1.976 | 1.982 |
| σN5–C6 | 1.970 | 1.982 | 1.982 | 1.981 | 1.978 | 1.977 | 1.981 | 1.982 |
| πN1–C6 | 1.655 | 1.647 | 1.655 | 1.661 | 1.685 | 1.697 | 1.695 | 1.657 |
| πC2–N3 | 1.655 | 1.647 | 1.654 | 1.661 | 1.687 | 1.693 | 1.625 | 1.657 |
| πC4–N5 | 1.655 | 1.647 | 1.637 | 1.631 | 1.627 | 1.628 | 1.686 | 1.657 |
| σC2–C8′ | 1.963 | 1.969 | 1.969 | 1.968 | 1.968 | 1.968 | 1.967 | 1.979 |
| σC4–C8″ | 1.962 | 1.969 | 1.967 | 1.967 | 1.965 | 1.964 | 1.964 | 1.979 |
| σC6–C8 | 1.963 | 1.969 | 1.969 | 1.969 | 1.968 | 1.968 | 1.970 | 1.979 |
| π*N1–C6 | 0.367 | 0.354 | 0.364 | 0.372 | 0.357 | 0.353 | 0.354 | 0.371 |
| π*C2–N3 | 0.366 | 0.354 | 0.354 | 0.355 | 0.355 | 0.360 | 0.365 | 0.371 |
| π*C4–N5 | 0.376 | 0.354 | 0.352 | 0.353 | 0.354 | 0.360 | 0.364 | 0.371 |
| Σπ | 4.965 | 4.941 | 4.946 | 4.953 | 4.999 | 5.018 | 5.006 | 4.971 |
| Σπ* | 1.109 | 1.062 | 1.070 | 1.08 | 1.066 | 1.073 | 1.083 | 1.113 |
| Σπ + Σπ* | 6.074 | 6.003 | 6.016 | 6.033 | 6.065 | 6.091 | 6.089 | 6.084 |
R is the reference molecule 2,4,6-tricyano-1,3,5-triazine.
Energies (in au) of R at the B3LYP/cc-pvDZ Theory Level (R = (C3N3)2, = 3–9)a
| orbital | ||||||||
|---|---|---|---|---|---|---|---|---|
| σN1–C2 | –0.87244 | –0.87731 | –0.87623 | –0.87429 | –0.86862 | –0.86681 | –0.87590 | –0.92662 |
| σN1–C6 | –0.86551 | –0.87585 | –0.87560 | –0.87395 | –0.87871 | –0.87989 | –0.86954 | –0.92662 |
| σC2–N3 | –0.88784 | –0.87585 | –0.86649 | –0.85983 | –0.86517 | –0.86783 | –0.84614 | –0.92662 |
| σN3–C4 | –0.87244 | –0.87731 | –0.88388 | –0.88916 | –0.89070 | –0.89160 | –0.88000 | –0.92662 |
| σC4–N5 | –0.86551 | –0.87585 | –0.88312 | –0.88871 | –0.88541 | –0.88261 | –0.89505 | –0.92662 |
| σN5–C6 | –0.88784 | –0.87731 | –0.86852 | –0.86225 | –0.85149 | –0.84664 | –0.86994 | –0.92662 |
| πN1–C6 | –0.35254 | –0.35302 | –0.34896 | –0.34681 | –0.34790 | –0.34895 | –0.34785 | –0.39605 |
| πC2–N3 | –0.35254 | –0.35302 | –0.35554 | –0.35747 | –0.36051 | –0.36001 | –0.34649 | –0.39605 |
| πC4–N5 | –0.35254 | –0.35302 | –0.35087 | –0.34981 | –0.34882 | –0.34805 | –0.35792 | –0.39605 |
| σC2–C8′ | –0.63801 | –0.66467 | –0.67861 | –0.68035 | –0.68246 | –0.68077 | –0.68013 | –0.79818 |
| σC4–C8″ | –0.67602 | –0.66467 | –0.66016 | –0.65727 | –0.66009 | –0.66388 | –0.66176 | –0.79818 |
| σC6–C8 | –0.63801 | –0.66467 | –0.67936 | –0.68121 | –0.68245 | –0.68081 | –0.67132 | –0.79818 |
| π*N1–C6 | –0.05067 | –0.04146 | –0.04247 | –0.04399 | –0.04707 | –0.04874 | –0.04874 | –0.09069 |
| π*C2–N3 | –0.04158 | –0.04146 | –0.03599 | –0.04437 | –0.03016 | –0.03138 | –0.03850 | –0.09069 |
| π*C4–N5 | –0.03590 | –0.04146 | –0.04435 | –0.03269 | –0.04093 | –0.03928 | –0.03265 | –0.09069 |
R is the reference molecule 2,4,6-tricyano-1,3,5-triazine.
Figure 5z view diagrams of the lowest-energy σ-orbital (labeled by MO and number) in R at the B3LYP/cc-pvDZ theory level (R = (C3N3)2, = 3–9).
Figure 6x view and z view diagrams of the lowest-energy σ-orbital (labeled by MO and number) in R/benzene at the B3LYP/cc-pvDZ theory level.
Figure 7Diagrams of the selected (not necessarily the lowest-energy) π-orbital (labeled by MO and number) in R at the B3LYP/cc-pvDZ theory level (R = (C3N3)2, = 3–9).
Figure 8x view and z view diagrams of the lowest-energy orbital (labeled by MO and number) in R/benzene at the B3LYP/cc-pvDZ theory level.
Total Energies E0 (in au, Including Zero-Point Energy Corrections), the Enthalpies Hf (in au, Including Zero-Point Energy Corrections), and the ΔHf (in kcal mol–1) of R and R at the B3LYP/cc-pvDZ Theory Level (R = (C3N3)2, = 3–9)a
| molecule | Δ | ΔΔ | ||
|---|---|---|---|---|
| C6N6 ( | –557.028290 | –557.017860 | 165.7 | |
| –1670.737502 | –1670.717901 | 707.8 | 210.7 | |
| –2227.924965 | –2227.898752 | 771.2 | 108.4 | |
| –2785.009094 | –2784.975426 | 900.1 | 71.6 | |
| –3342.004024 | –3341.962935 | 1084.8 | 90.6 | |
| –3898.936043 | –3898.887923 | 1308.8 | 148.9 | |
| –4455.836558 | –4455.781344 | 1552.6 | 227.0 | |
| –5012.720499 | –5012.657440 | 1807.3 | 316.0 |
R is the reference molecule 2,4,6-tricyano-1,3,5-triazine.