| Literature DB >> 32475433 |
Yingping Xiao1, Wentao Lyu1, Hua Yang1, Xiaoqin Xu2, Caiquan Zhou2, Lizhi Lu3, Long Zhang4.
Abstract
Cathelicidins represent a major group of host defense peptides (HDPs) that share a highly conserved cathelin-like domain. In birds, this gene family has been identified in many species. However, no information was available in the goose until now. In this study, we present the molecular characterization of 2 goose cathelicidin genes, namely goose CATH2 and goose CATH3, for the first time. The complete cDNA of goose CATH2 and goose CATH3 were 571 bp and 573 bp in length, respectively, and the deduced amino acid sequences exhibited high similarity with other avian cathelicidins. Furthermore, evolutionary analyses indicated that all known cathelicidins form 3 distinct clusters from reptiles, while the oldest cathelicidin member, which is known as CATHB1, is very likely absent in the goose genome. Meanwhile, highly expressed goose CATH2 and goose CATH3 were also observed in primary and secondary lymphoid tissues, same as the observations in other avian species. In addition, chemically synthesized mature peptides of the 2 cathelicidins exerted optimal antimicrobial abilities to a range of gram-negative and gram-positive bacteria. The discovery and characterization of goose cathelicidins complete the knowledge for goose HDPs and might contribute to understanding the evolution of avian cathelicidins as well as for the development of antibacterial agents.Entities:
Keywords: antimicrobial activity; cathelicidin; gene expression; goose; phylogenetic analysis
Mesh:
Substances:
Year: 2020 PMID: 32475433 PMCID: PMC7597728 DOI: 10.1016/j.psj.2020.03.021
Source DB: PubMed Journal: Poult Sci ISSN: 0032-5791 Impact factor: 3.352
Primer sequences used for gene clone and real-time PCR analysis.
| Primer name | Primer sequences (5′to3′) | Product size (bp) | Purpose |
|---|---|---|---|
| GAPDH-F | CTGCCCAGAACATTATCCCAGCAT | 137 | Real-time PCR |
| GAPDH-R | GCAGGTCAGGTCCACGACAGA | ||
| CATHL2-F | CCGCCGACGACTGCGACTT | 78 | Real-time PCR |
| CATHL2-R | GGGTGCCCTGCTGGAACGT | ||
| CATHL3-F | GCAGGCCGTGGACACCTACA | 104 | Real-time PCR |
| CATHL3-R | GCAGGGAGCTGAGCTGGACAT | ||
| mCATHL2-F | CCYGAGSTGCASAAYGCCTTC | 298 | Coding region amplification |
| mCATHL2-R | GYCGGAYCTTBCYCAGGAAGC | ||
| rCATHL2-F1 | GGTGCAGAACGCCTTCAGGCTGCTC | 335 | 3′-RACE |
| rCATHL2-F2 | GGGCGCTCAACTTCACCATAATGGAGACA | ||
| rCATHL2-R1 | GGCCCCGTTCTCCTTGAAGTCGCAGT | 280 | 5′-RACE |
| rCATHL2-R2 | GCCCGGGGCACAGTCTGTCTCCATTA | ||
| mCATHL3-F | GSCCYGAGGTGCASAAYGCCTTC | 261 | Coding region amplification |
| mCATHL3-R | GAGTCCACGCAGGTGACATCGA | ||
| rCATHL3-R1 | CCGTCCTCCTTGAAGTCGCAGGTGTC | 212 | 5′-RACE |
| rCATHL3-R2 | GGTTCCGCAGGGAGCTGAGCTGGAC | ||
| rCATHL3-F1 | CCTGCGGAACCTCAACTTCACCATCA | 309 | 3′-RACE |
| rCATHL3-F2 | CCGACACCTGCGACTTCAAGGAGGAC |
Figure 1Complementary cDNA and deduced amino acids sequences of goose CATH2 (A) and CATH3 (B). The asterisk represents the termination codon, and the numbers refer to the position of nucleotide or amino acid.
Figure 2Multiple sequence alignment of representative avian cathelicidin sequences. The conserved residues are shaded, and the predicted C-terminal mature peptides are boxed with the lengths and net charges (in parenthesis). The mature peptides of the cathelicidin genes were deduced based on the amino acid alignment of chicken cathelicidin peptides, and the net charge of each mature peptide was estimated by using the online software at https://pepcalc.com/.
Figure 3Phylogenetic analysis of the goose cathelicidin genes and representative cathelicidins from birds and reptiles. The topology was constructed by the amino acid sequences using the Neighbor-Joining method with 1000 bootstrap replicates. Only branches supported by a bootstrap value higher than 50 are shown at branching points.
Figure 4Tissues expression pattern of goose CATH2 and CATH3. Tissues were collected from six 7-day-old goose and 42-day-old geese, respectively. The expression levels of the cathelicidins were calculated relative to that of CATH3 in proventriculus from 7-day-old goose using glyceraldehyde-3-phosphate dehydrogenase (GAPDH) as the endogenous control gene. The color elements represent the average log2 ratios of fold change from 6 samples. The gray areas mean the absence of data due to the unavailability of the thymus from 42-day-old geese.
Minimum inhibitory concentrations (μM) of goose CATH2 and CATH3 mature peptides.
| Bacteria | MIC(μM) | |
|---|---|---|
| CATH2 | CATH3 | |
| Gram-negative | ||
| | 4–8 | 1 |
| | 8–16 | 4 |
| | 2 | 2 |
| Gram-positive | ||
| | 8 | 1 |
| | 4 | 4 |
| | 2 | 1 |
Abbreviation: MIC, minimal inhibitory concentration.
These concentrations represent the ranges of MIC values of 3 independent experiments performed in duplicate.