Literature DB >> 32473745

Taming the Turmoil Within: New Insights on the Containment of Transposable Elements.

Erin S Kelleher1, Daniel A Barbash2, Justin P Blumenstiel3.   

Abstract

Transposable elements (TEs) are mobile genetic parasites that can exponentially increase their genomic abundance through self-propagation. Classic theoretical papers highlighted the importance of two potentially escalating forces that oppose TE spread: regulated transposition and purifying selection. Here, we review new insights into mechanisms of TE regulation and purifying selection, which reveal the remarkable foresight of these theoretical models. We further highlight emergent connections between transcriptional control enacted by small RNAs and the contribution of TE insertions to structural mutation and host-gene regulation. Finally, we call for increased comparative analysis of TE dynamics and fitness effects, as well as host control mechanisms, to reveal how interconnected forces shape the differential prevalence and distribution of TEs across the tree of life.
Copyright © 2020 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  genome evolution; heterochromatic spreading; piRNA pathway; synergistic epistasis; transposable elements

Mesh:

Substances:

Year:  2020        PMID: 32473745      PMCID: PMC7347376          DOI: 10.1016/j.tig.2020.04.007

Source DB:  PubMed          Journal:  Trends Genet        ISSN: 0168-9525            Impact factor:   11.639


  107 in total

Review 1.  Transcriptional interference--a crash course.

Authors:  Keith E Shearwin; Benjamin P Callen; J Barry Egan
Journal:  Trends Genet       Date:  2005-06       Impact factor: 11.639

Review 2.  The population genetics of Drosophila transposable elements.

Authors:  B Charlesworth; C H Langley
Journal:  Annu Rev Genet       Date:  1989       Impact factor: 16.830

3.  Population dynamics of PIWI-interacting RNAs (piRNAs) and their targets in Drosophila.

Authors:  Jian Lu; Andrew G Clark
Journal:  Genome Res       Date:  2009-11-30       Impact factor: 9.043

4.  The Evolution of Small-RNA-Mediated Silencing of an Invading Transposable Element.

Authors:  Erin S Kelleher; Ricardo B R Azevedo; Yichen Zheng
Journal:  Genome Biol Evol       Date:  2018-11-01       Impact factor: 3.416

5.  Epigenetic remodeling of meiotic crossover frequency in Arabidopsis thaliana DNA methyltransferase mutants.

Authors:  Nataliya E Yelina; Kyuha Choi; Liudmila Chelysheva; Malcolm Macaulay; Bastiaan de Snoo; Erik Wijnker; Nigel Miller; Jan Drouaud; Mathilde Grelon; Gregory P Copenhaver; Christine Mezard; Krystyna A Kelly; Ian R Henderson
Journal:  PLoS Genet       Date:  2012-08-02       Impact factor: 5.917

6.  DNA methylation restrains transposons from adopting a chromatin signature permissive for meiotic recombination.

Authors:  Natasha Zamudio; Joan Barau; Aurélie Teissandier; Marius Walter; Maté Borsos; Nicolas Servant; Déborah Bourc'his
Journal:  Genes Dev       Date:  2015-06-15       Impact factor: 11.361

7.  Variation in piRNA and transposable element content in strains of Drosophila melanogaster.

Authors:  Jimin Song; Jixia Liu; Sandra L Schnakenberg; Hongseok Ha; Jinchuan Xing; Kevin C Chen
Journal:  Genome Biol Evol       Date:  2014-09-29       Impact factor: 3.416

8.  Nucleosomes and DNA methylation shape meiotic DSB frequency in Arabidopsis thaliana transposons and gene regulatory regions.

Authors:  Kyuha Choi; Xiaohui Zhao; Andrew J Tock; Christophe Lambing; Charles J Underwood; Thomas J Hardcastle; Heïdi Serra; Juhyun Kim; Hyun Seob Cho; Jaeil Kim; Piotr A Ziolkowski; Nataliya E Yelina; Ildoo Hwang; Robert A Martienssen; Ian R Henderson
Journal:  Genome Res       Date:  2018-03-12       Impact factor: 9.043

9.  Transcriptional silencing of transposons by Piwi and maelstrom and its impact on chromatin state and gene expression.

Authors:  Grzegorz Sienski; Derya Dönertas; Julius Brennecke
Journal:  Cell       Date:  2012-11-15       Impact factor: 41.582

10.  Pericentromeric heterochromatin is hierarchically organized and spatially contacts H3K9me2 islands in euchromatin.

Authors:  Yuh Chwen G Lee; Yuki Ogiyama; Nuno M C Martins; Brian J Beliveau; David Acevedo; C-Ting Wu; Giacomo Cavalli; Gary H Karpen
Journal:  PLoS Genet       Date:  2020-03-23       Impact factor: 5.917

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  8 in total

1.  P-elements strengthen reproductive isolation within the Drosophila simulans species complex.

Authors:  Antonio Serrato-Capuchina; Emmanuel R R D'Agostino; David Peede; Baylee Roy; Kristin Isbell; Jeremy Wang; Daniel R Matute
Journal:  Evolution       Date:  2021-09-01       Impact factor: 3.694

2.  Species-specific chromatin landscape determines how transposable elements shape genome evolution.

Authors:  Yuheng Huang; Harsh Shukla; Yuh Chwen G Lee
Journal:  Elife       Date:  2022-08-23       Impact factor: 8.713

3.  The origin of RNA interference: Adaptive or neutral evolution?

Authors:  Alessandro Torri; Johannes Jaeger; Thomas Pradeu; Maria-Carla Saleh
Journal:  PLoS Biol       Date:  2022-06-29       Impact factor: 9.593

4.  The Transposition Rate Has Little Influence on the Plateauing Level of the P-element.

Authors:  Robert Kofler; Viola Nolte; Christian Schlötterer
Journal:  Mol Biol Evol       Date:  2022-07-02       Impact factor: 8.800

Review 5.  Functional Diversification of Chromatin on Rapid Evolutionary Timescales.

Authors:  Cara L Brand; Mia T Levine
Journal:  Annu Rev Genet       Date:  2021-11-23       Impact factor: 13.826

6.  Patterns of piRNA Regulation in Drosophila Revealed through Transposable Element Clade Inference.

Authors:  Iskander Said; Michael P McGurk; Andrew G Clark; Daniel A Barbash
Journal:  Mol Biol Evol       Date:  2022-01-07       Impact factor: 8.800

7.  Synergistic epistasis of the deleterious effects of transposable elements.

Authors:  Yuh Chwen G Lee
Journal:  Genetics       Date:  2022-02-04       Impact factor: 4.402

8.  Rapid evolution at the Drosophila telomere: transposable element dynamics at an intrinsically unstable locus.

Authors:  Michael P McGurk; Anne-Marie Dion-Côté; Daniel A Barbash
Journal:  Genetics       Date:  2021-02-09       Impact factor: 4.562

  8 in total

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