Literature DB >> 32469239

Application of spike sorting algorithm to neuronal signals originated from boron doped diamond micro-electrode arrays.

O Klempíř1, R Krupička, J Krůšek, I Dittert, V Petráková, V Petrák, A Taylor.   

Abstract

In this work we report on the implementation of methods for data processing signals from microelectrode arrays (MEA) and the application of these methods for signals originated from two types of MEAs to detect putative neurons and sort them into subpopulations. We recorded electrical signals from firing neurons using titanium nitride (TiN) and boron doped diamond (BDD) MEAs. In previous research, we have shown that these methods have the capacity to detect neurons using commercially-available TiN-MEAs. We have managed to cultivate and record hippocampal neurons for the first time using a newly developed custom-made multichannel BDD-MEA with 20 recording sites. We have analysed the signals with the algorithms developed and employed them to inspect firing bursts and enable spike sorting. We did not observe any significant difference between BDD- and TiN-MEAs over the parameters, which estimated spike shape variability per each detected neuron. This result supports the hypothesis that we have detected real neurons, rather than noise, in the BDD-MEA signal. BDD materials with suitable mechanical, electrical and biocompatibility properties have a large potential in novel therapies for treatments of neural pathologies, such as deep brain stimulation in Parkinson's disease.

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Year:  2020        PMID: 32469239      PMCID: PMC8648311          DOI: 10.33549/physiolres.934366

Source DB:  PubMed          Journal:  Physiol Res        ISSN: 0862-8408            Impact factor:   1.881


  17 in total

Review 1.  Microelectronics, bioinformatics and neurocomputation for massive neuronal recordings in brain circuits with large scale multielectrode array probes.

Authors:  Alessandro Maccione; Mauro Gandolfo; Stefano Zordan; Hayder Amin; Stefano Di Marco; Thierry Nieus; Gian Nicola Angotzi; Luca Berdondini
Journal:  Brain Res Bull       Date:  2015-07-29       Impact factor: 4.077

2.  3D-nanostructured boron-doped diamond for microelectrode array neural interfacing.

Authors:  Gaëlle Piret; Clément Hébert; Jean-Paul Mazellier; Lionel Rousseau; Emmanuel Scorsone; Myline Cottance; Gaelle Lissorgues; Marc O Heuschkel; Serge Picaud; Philippe Bergonzo; Blaise Yvert
Journal:  Biomaterials       Date:  2015-03-13       Impact factor: 12.479

3.  Highly sensitive detection of influenza virus by boron-doped diamond electrode terminated with sialic acid-mimic peptide.

Authors:  Teruhiko Matsubara; Michiko Ujie; Takashi Yamamoto; Miku Akahori; Yasuaki Einaga; Toshinori Sato
Journal:  Proc Natl Acad Sci U S A       Date:  2016-07-25       Impact factor: 11.205

4.  Bioelectronic neural pixel: Chemical stimulation and electrical sensing at the same site.

Authors:  Amanda Jonsson; Sahika Inal; Ilke Uguz; Adam J Williamson; Loïg Kergoat; Jonathan Rivnay; Dion Khodagholy; Magnus Berggren; Christophe Bernard; George G Malliaras; Daniel T Simon
Journal:  Proc Natl Acad Sci U S A       Date:  2016-08-09       Impact factor: 11.205

5.  Boron-doped nanocrystalline diamond microelectrode arrays monitor cardiac action potentials.

Authors:  Vanessa Maybeck; Robert Edgington; Alexandre Bongrain; Joseph O Welch; Emanuel Scorsone; Philippe Bergonzo; Richard B Jackman; Andreas Offenhäusser
Journal:  Adv Healthc Mater       Date:  2013-08-15       Impact factor: 9.933

6.  Fast tonotopy mapping of the rat auditory cortex with a custom-made electrode array.

Authors:  J Lindovský; K Pysanenko; J Popelář; J Syka
Journal:  Physiol Res       Date:  2018-09-11       Impact factor: 1.881

7.  Action potential waveform variability limits multi-unit separation in freely behaving rats.

Authors:  Peter Stratton; Allen Cheung; Janet Wiles; Eugene Kiyatkin; Pankaj Sah; François Windels
Journal:  PLoS One       Date:  2012-06-12       Impact factor: 3.240

Review 8.  Revealing neuronal function through microelectrode array recordings.

Authors:  Marie Engelene J Obien; Kosmas Deligkaris; Torsten Bullmann; Douglas J Bakkum; Urs Frey
Journal:  Front Neurosci       Date:  2015-01-06       Impact factor: 4.677

9.  A Diamond-Based Electrode for Detection of Neurochemicals in the Human Brain.

Authors:  Kevin E Bennet; Jonathan R Tomshine; Hoon-Ki Min; Felicia S Manciu; Michael P Marsh; Seungleal B Paek; Megan L Settell; Evan N Nicolai; Charles D Blaha; Abbas Z Kouzani; Su-Youne Chang; Kendall H Lee
Journal:  Front Hum Neurosci       Date:  2016-03-15       Impact factor: 3.169

10.  SCANPY: large-scale single-cell gene expression data analysis.

Authors:  F Alexander Wolf; Philipp Angerer; Fabian J Theis
Journal:  Genome Biol       Date:  2018-02-06       Impact factor: 13.583

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  1 in total

Review 1.  From End to End: Gaining, Sorting, and Employing High-Density Neural Single Unit Recordings.

Authors:  Réka Barbara Bod; János Rokai; Domokos Meszéna; Richárd Fiáth; István Ulbert; Gergely Márton
Journal:  Front Neuroinform       Date:  2022-06-13       Impact factor: 3.739

  1 in total

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