Literature DB >> 32468160

Unlocking the Genomic Taxonomy of the Prochlorococcus Collective.

Diogo Tschoeke1, Vinicius W Salazar1, Livia Vidal1, Mariana Campeão1, Jean Swings1,2, Fabiano Thompson1, Cristiane Thompson3.   

Abstract

Prochlorococcus is the most abundant photosynthetic prokaryote on our planet. The extensive ecological literature on the Prochlorococcus collective (PC) is based on the assumption that it comprises one single genus comprising the species Prochlorococcus marinus, containing itself a collective of ecotypes. Ecologists adopt the distributed genome hypothesis of an open pan-genome to explain the observed genomic diversity and evolution patterns of the ecotypes within PC. Novel genomic data for the PC prompted us to revisit this group, applying the current methods used in genomic taxonomy. As a result, we were able to distinguish the five genera: Prochlorococcus, Eurycolium, Prolificoccus, Thaumococcus, and Riococcus. The novel genera have distinct genomic and ecological attributes.

Entities:  

Keywords:  Eco-genomics; Evolution; Genomic taxonomy; Prochlorococcus collective

Mesh:

Year:  2020        PMID: 32468160     DOI: 10.1007/s00248-020-01526-5

Source DB:  PubMed          Journal:  Microb Ecol        ISSN: 0095-3628            Impact factor:   4.552


  3 in total

1.  EnteroBase: hierarchical clustering of 100 000s of bacterial genomes into species/subspecies and populations.

Authors:  Mark Achtman; Zhemin Zhou; Jane Charlesworth; Laura Baxter
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2022-08-22       Impact factor: 6.671

2.  GTDB: an ongoing census of bacterial and archaeal diversity through a phylogenetically consistent, rank normalized and complete genome-based taxonomy.

Authors:  Donovan H Parks; Maria Chuvochina; Christian Rinke; Aaron J Mussig; Pierre-Alain Chaumeil; Philip Hugenholtz
Journal:  Nucleic Acids Res       Date:  2022-01-07       Impact factor: 16.971

3.  Ontology-Enriched Specifications Enabling Findable, Accessible, Interoperable, and Reusable Marine Metagenomic Datasets in Cyberinfrastructure Systems.

Authors:  Kai L Blumberg; Alise J Ponsero; Matthew Bomhoff; Elisha M Wood-Charlson; Edward F DeLong; Bonnie L Hurwitz
Journal:  Front Microbiol       Date:  2021-12-08       Impact factor: 5.640

  3 in total

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