| Literature DB >> 32467915 |
P W Crous1,2,3, R K Schumacher4, A R Wood5, J Z Groenewald1.
Abstract
The present paper represents the fifth contribution in the Genera of Fungi series, linking type species of fungal genera to their morphology and DNA sequence data. This paper focuses on 11 genera of microfungi, for seven of which the type species are neo- or epitypified here: Arthrinium (Arthrinium caricicola; Apiosporaceae, Xylariales, Sordariomycetes), Ceratosphaeria (Ceratosphaeria lampadophora; Magnaporthaceae, Magnaporthales, Sordariomycetes), Dimerosporiopsis (Dimerosporiopsis engleriana; Venturiaceae, Venturiales, Dothideomycetes), Hormodochis (Hormodochis melanochlora; Stictidaceae, Ostropales, Ostropomycetidae, OSLEUM clade, Lecanoromycetes), Lecanostictopsis (Lecanostictopsis kamatii; Mycosphaerellaceae, Capnodiales, Dothideomycetes), Lembosina (Lembosina aulographoides; Lembosinaceae fam. nov., Lembosinales ord. nov., Dothideomycetes), Neomelanconium (Neomelanconium gelatosporum; Cenangiaceae, Helotiales, Leotiomycetes), Phragmotrichum (Phragmotrichum chailletii; Melanommataceae, Pleosporales, Pleosporomycetidae, Dothideomycetes), Pseudomelanconium gen. nov. (Pseudomelanconium spartii; incertae sedis, Pezizomycotina), Rutola (Rutola graminis; Torulaceae, Pleosporales, Pleosporomycetidae, Dothideomycetes), and Trullula (Trullula oreoselini; incertae sedis, Pezizomycotina).Entities:
Keywords: ITS barcodes; biodiversity; multi-gene phylogeny; new taxa; systematics; typification
Year: 2019 PMID: 32467915 PMCID: PMC7250017 DOI: 10.3114/fuse.2020.05.04
Source DB: PubMed Journal: Fungal Syst Evol ISSN: 2589-3823
Collection details and GenBank accession numbers of species treated or newly sequenced in the present study.
| ALV16691 | Germany | R. Jarling, 23 Jun. 2018 | MK014871.1 | MK014838.1 | – | MK017948.1 | |||
| CPC 33297 = CBS 145903, ex-epitype | Germany | R.K. Schumacher, 4 Apr. 2017 | MN313782.1 | MN317266.1 | – | – | |||
| CPC 33299 = CBS 144986 | Germany | R.K. Schumacher, 4 Apr. 2017 | MN313783.1 | MN317267.1 | – | ||||
| CPC 33368 | Germany | R.K. Schumacher, 4 Apr. 2017 | MN313784.1 | MN317268.1 | – | – | |||
| CBS 117555 | France | J. Fournier, 11 Apr. 2001 | AY761084.1 | – | – | SSU: AY761088.1 | |||
| CBS 125415 = MR 1834 = JF 01115 | France | J. Fournier, 18 Jun. 2001 | MH863598.1 | MH875074.1 | – | – | |||
| CPC 33633 = CBS 144991 | France | M. Wilhelm, 15 Mar. 2017 | MN313785.1 | MN317269.1 | – | – | |||
| Voucher SMH4822 | France | Branch on the ground | A.N. Miller | – | AY346270.1 | – | – | – | |
| HPC 2591, epitype specimen | South Africa | A. Wood, 24 Sep. 2014 | MN313786.1 | MN317270.1 | – | – | – | ||
| CPC 24027 | Germany | R.K. Schumacher, 21 Dec. 2013 | MN313787.1 | MN317271.1 | MN313819.1 | – | |||
| CPC 24159 | Germany | R.K. Schumacher, 21 Dec. 2013 | MN313788.1 | MN317272.1 | MN313820.1 | – | |||
| CPC 24593 | Germany | R.K. Schumacher, 5 Apr. 2014 | MN313789.1 | MN317273.1 | MN313821.1 | – | |||
| CPC 26669 | Germany | R.K. Schumacher, 7 Mar. 2015 | MN313790.1 | MN317274.1 | MN313822.1 | MN313842.1 | – | ||
| CPC 30017 | Germany | R.K. Schumacher, 9 Jan. 2016 | MN313791.1 | MN317275.1 | MN313823.1 | – | – | ||
| CPC 30413 | Germany | R.K. Schumacher, 17 Feb. 2016 | MN313792.1 | MN317276.1 | MN313824.1 | MN313843.1 | – | ||
| CPC 30453 | Germany | R.K. Schumacher, 12 Feb. 2016 | MN313793.1 | MN317277.1 | MN313825.1 | MN313844.1 | – | ||
| CPC 30528 | Germany | R.K. Schumacher, 2 Apr. 2016 | MN313794.1 | MN317278.1 | MN313826.1 | MN313845.1 | – | ||
| CPC 30530 | Germany | R.K. Schumacher, 11 Mar. 2016 | MN313795.1 | MN317279.1 | MN313827.1 | MN313846.1 | |||
| CPC 30580 | Germany | R.K. Schumacher, 20 Apr. 2016 | MN313796.1 | – | – | – | |||
| CPC 30630 | Germany | R.K. Schumacher, 1 Mar. 2016 | MN313797.1 | MN313847.1 | |||||
| CPC 30683 = CBS 145904, ex-type | Germany | R.K. Schumacher, 27 Apr. 2016 | MN313798.1 | MN317280.1 | MN313828.1 | MN313848.1 | |||
| CPC 30685 | Germany | R.K. Schumacher, 2 May 2016 | MN313799.1 | MN317281.1 | MN313829.1 | MN313849.1 | – | ||
| CPC 30737 | Germany | R.K. Schumacher, 30 Apr. 2016 | MN313800.1 | MN317282.1 | MN313830.1 | MN313850.1 | – | ||
| CPC 30990 | Hungary | R.K. Schumacher, 1 May 2016 | MN313801.1 | MN317283.1 | MN313831.1 | MN313851.1 | – | ||
| CPC 33325 | Germany | R.K. Schumacher, 3 Feb. 2017 | MN313802.1 | – | MN313832.1 | – | |||
| CPC 33331 | Germany | R.K. Schumacher, 11 Mar. 2017 | MN313803.1 | MN317284.1 | MN313833.1 | – | – | ||
| CPC 33913 | Germany | R.K. Schumacher, 2 Jun. 2017 | MN313804.1 | MN317285.1 | MN313834.1 | – | – | ||
| CPC 35471 = CBS 145905 | Germany | R.K. Schumacher, 25 Apr. 2018 | MN313805.1 | MN317286.1 | MN313835.1 | MN313852.1 | |||
| CPC 35475 | Germany | R.K. Schumacher, 27 Mar. 2018 | MN313806.1 | MN317287.1 | MN313836.1 | MN313853.1 | – | ||
| CPC 37499 | Germany | R.K. Schumacher, 15 Feb.2019 | MN313807.1 | MN317288.1 | MN313837.1 | MN313854.1 | – | ||
| CPC 24125 = CBS 138861, ex-epitype | Germany | R.K. Schumacher, 21 Dec. 2013 | KP004459.1 | KP004487.1 | MN313838.1 | MN313855.1 | |||
| HPC 2573, epitype specimen | South Africa | P.W. Crous, 11 Aug. 2018 | MN313808.1 | MN317289.1 | – | – | – | ||
| CPC 33049 = CBS 145946, ex-epitype | Netherlands | P.W. Crous, 1 Feb. 2017 | MN313809.1 | MN317290.1 | MN313839.1 | – | – | ||
| CPC 31126 = CBS 144985, ex-epitype | Germany | R.K. Schumacher, 2 May 2016 | MN313810.1 | MN317291.1 | – | MN313856.1 | |||
| CPC 31127, ex-epitype | Germany | R.K. Schumacher, 2 May 2016 | MN313811.1 | MN317292.1 | – | MN313857.1 | |||
| CPC 33263 = CBS 144994, ex¬neotype | Switzerland | J.Gilgen & R.K. Schumacher, 7 Mar. 2017 | MN313812.1 | MN317293.1 | MN313840.1 | MN313858.1 | – | ||
| CPC 33341 = CBS 144993 | Switzerland | J. Gilgen & R.K. Schumacher, 7 Mar. 2017 | MN313813.1 | MN317294.1 | MN313841.1 | MN313859.1 | – | ||
| CPC 33267 = CBS 145906, ex-epitype | Germany | R.K. Schumacher, 1 Apr. 2017 | MN313814.1 | MN317295.1 | – | – | – | ||
| CPC 33695 | Norway | Kaare Flomble, 3 May 2017 | MN313815.1 | MN317296.1 | – | – | – | ||
| CPC 33715 | Germany | R.K. Schumacher, 3 May 2017 | MN313816.1 | MN317297.1 | – | – | – | ||
| CPC 24114 = CBS 140066, exneotype | Netherlands | W. Quaedvlieg, 24 Jan. 2014 | KR873260.1 | KR873288.1 | ‒ | ‒ | ‒ | ||
| CPC 24115 | Netherlands | W. Quaedvlieg, 24 Jan. 2014 | MN313817.1 | ‒ | ‒ | ‒ | ‒ | ||
| CPC 33688 = CBS 144995 | Germany | R.K. Schumacher, 3 May 2017 | MN313818.1 | MN317298.1 | ‒ | ‒ | ‒ | ||
1CBS: Westerdijk Fungal Biodiversity Institute, Utrecht, The Netherlands; CPC: Culture collection of Pedro Crous, housed at CBS.
2ITS: internal transcribed spacers and intervening 5.8S nrDNA; LSU: large subunit (28S) of the nrRNA gene operon; act: partial actin gene; rpb1: partial DNA-directed RNA polymerase II largest subunit gene; rpb2: partial DNA-directed RNA polymerase II second largest subunit gene; SSU: small subunit (18S) of the nrRNA gene operon; tef1: partial translation elongation factor 1-alpha gene; tub2: partial beta-tubulin gene.
Fig. 1.Bayesian phylogeny calculated from the Dothideomycetes LSU sequence alignment. Bayesian posterior probabilities are shown at the nodes and the scale bar represents the expected changes per site. Classes, families and orders are indicated with coloured blocks to the right of the tree. GenBank accession or culture numbers are indicated behind the species names. The tree was rooted to Magnaporthiopsis maydis (GenBank KM009148.1) and the species treated in this study for which LSU sequence data were available are indicated in coloured rounded rectangles.
Fig. 2.Bayesian phylogeny calculated from the Lecanoromycetes LSU sequence alignment. Bayesian posterior probabilities are shown at the nodes and the scale bar represents the expected changes per site. Classes, families and orders are indicated with coloured blocks to the right of the tree. GenBank accession or culture numbers are indicated behind the species names. The tree was rooted to Protoventuria alpina (GenBank EU035446.1) and the species treated in this study for which LSU sequence data were available are indicated in the coloured rounded rectangle.
Fig. 3.Bayesian phylogeny calculated from the Leotiomycetes and Sordariomycetes LSU sequence alignment. Bayesian posterior probabilities are shown at the nodes and the scale bar represents the expected changes per site. Classes, families and orders are indicated with coloured blocks to the right of the tree. GenBank accession or culture numbers are indicated behind the species names. The tree was rooted to Protoventuria alpina (GenBank EU035446.1) and the species treated in this study for which LSU sequence data were available are indicated in the coloured rounded rectangles.
Fig. 4.The first of two equally most parsimonious trees obtained from a phylogenetic analysis of the Hormodochis ITS alignment (23 strains including the outgroup; 491 characters analysed: 463 constant, 22 variable and parsimony-uninformative and 6 parsimony-informative). The tree was rooted to Phacidiella eucalypti (GenBank EF110617.1) and the scale bar indicates the number of changes. Bootstrap support values higher than 49 % are shown at the nodes and the species clades are highlighted with coloured boxes. Species names are indicated to the right of the tree. Strain numbers are followed by the substrate and country of origin. Branches present in the strict consensus tree are thickened. Tree statistics: TL = 32, CI = 0.938, RI = 0.923, RC = 0.865.
Fig. 5.Arthrinium caricicola (CPC 33297). A. Colonies on host material. B–F. Sterile cells. G. Conidiophore mother cells ad conidia. Scale bars: A = 400 μm, B = 10 μm, applies to all others.
Fig. 6.Ceratosphaeria lampadophora (CPC 33633). A. Black perithecial ascomata. B. Ascus. C. Ascospores. D–F. Conidiophores giving rise to conidia. G. Conidia. Scale bars: A = 3 mm, all others = 10 μm.
Fig. 7.Dimerosporiopsis engleriana (HPC 2591). A. Branch canker on Erica sp. B. Ascomata. C–E. Asci and pseudoparaphyses. F. Ascospores. Scale bars: B = 250 μm, all others = 10 μm.
Fig. 8.Hormodochis aggregata (CPC 30683). A. Section through conidioma. B, C. Conidiophores giving rise to conidia. D. Conidia. Scale bars = 10 μm.
Fig. 9.Hormodochis melanochlora (CPC 24125). A. Erumpent conidioma. B. Section through aggregated conidiomata. C–F. Conidiophores giving rise to conidia. G. Conidia. Scale bars: A, B = 300 μm, all others = 10 μm.
Fig. 10.Lecanostictopsis syzygii (HPC 2573). A. Conidiomata on leaf. B–G. Conidiogenous cells giving rise to conidia. H, I Conidia. Scale bars: A = 1 mm, all others = 10 μm, and C applies to D–I.
Fig. 11.Lembosina aulographoides (CPC 33049). A. Hysterothecioid ascomata on host tissue. B. Superficial view of hysterothecium. C. Asci viewed from above. D–F. Asci. G. Ascospores. Scale bars: A, B = 250 μm, all others = 10 μm.
Fig. 12.Neomelanconium gelatosporum (CPC 31126). A. Conidioma oozing conidia on host. B. Mucoid conidial droplet. C–E. Macroconidiogenous cells giving rise to macroconidia. F. Macroconidia. G, H. Microconidiogenous cells giving rise to microconidia. Scale bars: A = 250 μm, B = 30 μm, all others = 10 μm.
Fig. 13.Phragmotrichum chailletii (CPC 33263). A. Cupulate conidiomata on host tissue. B. Section through conidioma. C. Conidiogenous cells giving rise to conidia. D–F. Conidial chains. Scale bars: A = 350 μm, all others = 10 μm, and D applies to E, F.
Fig. 14.Rutola graminis (CPC 33267). A. Sporodochia on host tissue. B. Conidiogenous cells giving rise to conidia. C, D. Conidial chains. Scale bars: A = 5 mm, all others = 10 μm.
Fig. 15.Torula herbarum (CBS 144995). A–D. Conidiogenous cells giving rise to conidia. E–G. Conidia. Scale bars = 10 μm.
Fig. 16.Trullula oreoselini (holotype Herbarium B). A. Semi-immersed conidioma on host. B–E. Conidiogenous cells giving rise to conidia. Scale bars: A = 350 μm, all others = 10 μm.