Literature DB >> 32461782

A SR-NET 3D-TO-2D ARCHITECTURE FOR PARASEPTAL EMPHYSEMA SEGMENTATION.

D Bermejo-Peláez1, Y Okajima2, G R Washko2, M J Ledesma-Carbayo1, R San José Estépar2.   

Abstract

Paraseptal emphysema (PSE) is a relatively unexplored emphysema subtype that is usually asymptomatic, but recently associated with interstitial lung abnormalities which are related with clinical outcomes, including mortality. Previous local-based methods for emphysema subtype quantification do not properly characterize PSE. This is in part for their inability to properly capture the global aspect of the disease, as some the PSE lesions can involved large regions along the chest wall. It is our assumption, that path-based approaches are not well-suited to identify this subtype and segmentation is a better paradigm. In this work we propose and introduce the Slice-Recovery network (SR-Net) that leverages 3D contextual information for 2D segmentation of PSE lesions in CT images. For that purpose, a novel convolutional network architecture is presented, which follows an encoding-decoding path that processes a 3D volume to generate a 2D segmentation map. The dataset used for training and testing the method comprised 664 images, coming from 111 CT scans. The results demonstrate the benefit of the proposed approach which incorporate 3D context information to the network and the ability of the proposed method to identify and segment PSE lesions with different sizes even in the presence of other emphysema subtypes in an advanced stage.

Entities:  

Keywords:  Convolutional neural networks; Deep learning; Parasetal emphysema; Segmentation

Year:  2019        PMID: 32461782      PMCID: PMC7251982          DOI: 10.1109/isbi.2019.8759184

Source DB:  PubMed          Journal:  Proc IEEE Int Symp Biomed Imaging        ISSN: 1945-7928


  5 in total

1.  Fleischner Society: glossary of terms for thoracic imaging.

Authors:  David M Hansell; Alexander A Bankier; Heber MacMahon; Theresa C McLoud; Nestor L Müller; Jacques Remy
Journal:  Radiology       Date:  2008-01-14       Impact factor: 11.105

2.  The definition of emphysema. Report of a National Heart, Lung, and Blood Institute, Division of Lung Diseases workshop.

Authors: 
Journal:  Am Rev Respir Dis       Date:  1985-07

3.  Paraseptal emphysema: Prevalence and distribution on CT and association with interstitial lung abnormalities.

Authors:  Tetsuro Araki; Mizuki Nishino; Oscar E Zazueta; Wei Gao; Josée Dupuis; Yuka Okajima; Jeanne C Latourelle; Ivan O Rosas; Takamichi Murakami; George T O'Connor; George R Washko; Gary M Hunninghake; Hiroto Hatabu
Journal:  Eur J Radiol       Date:  2015-03-18       Impact factor: 3.528

4.  Quantitative analysis of pulmonary emphysema using local binary patterns.

Authors:  Lauge Sørensen; Saher B Shaker; Marleen de Bruijne
Journal:  IEEE Trans Med Imaging       Date:  2010-02       Impact factor: 10.048

5.  Identification of early interstitial lung disease in smokers from the COPDGene Study.

Authors:  George R Washko; David A Lynch; Shin Matsuoka; James C Ross; Shigeaki Umeoka; Alejandro Diaz; Frank C Sciurba; Gary M Hunninghake; Raúl San José Estépar; Edwin K Silverman; Ivan O Rosas; Hiroto Hatabu
Journal:  Acad Radiol       Date:  2009-09-24       Impact factor: 3.173

  5 in total
  2 in total

1.  Artificial Intelligence in COPD: New Venues to Study a Complex Disease.

Authors:  Raúl San José Estépar
Journal:  Barc Respir Netw Rev       Date:  2020 May-Dec

2.  Deep learning-based lesion subtyping and prediction of clinical outcomes in COVID-19 pneumonia using chest CT.

Authors:  David Bermejo-Peláez; Raúl San José Estépar; María Fernández-Velilla; Carmelo Palacios Miras; Guillermo Gallardo Madueño; Mariana Benegas; Carolina Gotera Rivera; Sandra Cuerpo; Miguel Luengo-Oroz; Jacobo Sellarés; Marcelo Sánchez; Gorka Bastarrika; German Peces Barba; Luis M Seijo; María J Ledesma-Carbayo
Journal:  Sci Rep       Date:  2022-06-07       Impact factor: 4.996

  2 in total

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