Literature DB >> 32461072

Transcriptomic Heterogeneity of Gleason Grade Group 5 Prostate Cancer.

Amar U Kishan1, Tahmineh Romero2, Mohammed Alshalalfa3, Yang Liu4, Phuoc T Tran5, Nicholas G Nickols6, Huihui Ye7, Dipti Sajed7, Matthew B Rettig8, Robert E Reiter9, Isla P Garraway10, Daniel E Spratt11, Steven J Freedland12, Xin Zhao4, Ziwen Li4, Matthew Deek5, Julie Livingstone13, Brandon A Mahal14, Paul L Nguyen14, Felix Y Feng3, Robert B Den15, Edward M Schaeffer16, Tamara L Lotan5, R Jeffrey Karnes17, Eric A Klein18, Ashley E Ross19, Tristan Grogan2, Elai Davicioni4, David Elashoff2, Paul C Boutros20, Joanne B Weidhaas13.   

Abstract

Gleason grade group (GG) 5 prostate cancer has been associated with an aggressive natural history, and retrospective data support a role for treatment intensification. However, clinical outcomes remain heterogeneous in this cohort, and intensified treatments carry an increased risk of adverse events. We sought to explore the transcriptomic heterogeneity of GG 5 tumors by querying transcriptomic data from the tumors of 2138 patients with GG 5 disease who underwent prostatectomy. Four distinct consensus clusters were identified with respect to differential transcriptional activation of hallmark pathways, with distinct molecular subtyping profiles and different average genomic risks (AGRs). One cluster, accounting for 325 tumors (15.2% of the population), was enriched for genes related to the cell cycle/proliferation, metabolic pathways, androgen response pathways, and DNA repair, and had a higher AGR than the other clusters (p < 0.001). This clustering, with an identification of a high genomic risk cluster, was subsequently validated in a separate cohort of 1921 patients as well as a third cohort of 201 patients. The latter cohort had outcomes available, and it was found that patients in the high genomic risk cluster had significantly worse distant metastasis-free survival than the other clusters. Tumors in this high genomic risk cluster of GG 5 disease may be particularly likely to benefit from treatment intensification. PATIENT
SUMMARY: In this report, we examined differences in gene expression in tumors from men with Gleason grade group 5 prostate cancer. We identified significant diversity, with one specific subgroup of tumors associated with expression profiles that suggest a worse prognosis.
Copyright © 2020 European Association of Urology. Published by Elsevier B.V. All rights reserved.

Entities:  

Keywords:  Biomarkers; Gleason grade group 5; Gleason score 10; Gleason score 9; Transcriptomics

Mesh:

Year:  2020        PMID: 32461072      PMCID: PMC8954568          DOI: 10.1016/j.eururo.2020.05.009

Source DB:  PubMed          Journal:  Eur Urol        ISSN: 0302-2838            Impact factor:   20.096


  12 in total

1.  The Diverse Genomic Landscape of Clinically Low-risk Prostate Cancer.

Authors:  Matthew R Cooperberg; Nicholas Erho; June M Chan; Felix Y Feng; Nick Fishbane; Shuang G Zhao; Jeffry P Simko; Janet E Cowan; Jonathan Lehrer; Mohammed Alshalalfa; Tyler Kolisnik; Jijumon Chelliserry; Jennifer Margrave; Maria Aranes; Marguerite du Plessis; Christine Buerki; Imelda Tenggara; Elai Davicioni; Peter R Carroll
Journal:  Eur Urol       Date:  2018-05-28       Impact factor: 20.096

2.  Development and Validation of a Novel Integrated Clinical-Genomic Risk Group Classification for Localized Prostate Cancer.

Authors:  Daniel E Spratt; Jingbin Zhang; María Santiago-Jiménez; Robert T Dess; John W Davis; Robert B Den; Adam P Dicker; Christopher J Kane; Alan Pollack; Radka Stoyanova; Firas Abdollah; Ashley E Ross; Adam Cole; Edward Uchio; Josh M Randall; Hao Nguyen; Shuang G Zhao; Rohit Mehra; Andrew G Glass; Lucia L C Lam; Jijumon Chelliserry; Marguerite du Plessis; Voleak Choeurng; Maria Aranes; Tyler Kolisnik; Jennifer Margrave; Jason Alter; Jennifer Jordan; Christine Buerki; Kasra Yousefi; Zaid Haddad; Elai Davicioni; Edouard J Trabulsi; Stacy Loeb; Ashutosh Tewari; Peter R Carroll; Sheila Weinmann; Edward M Schaeffer; Eric A Klein; R Jeffrey Karnes; Felix Y Feng; Paul L Nguyen
Journal:  J Clin Oncol       Date:  2017-11-29       Impact factor: 44.544

3.  A Prostate Cancer "Nimbosus": Genomic Instability and SChLAP1 Dysregulation Underpin Aggression of Intraductal and Cribriform Subpathologies.

Authors:  Melvin L K Chua; Winnie Lo; Melania Pintilie; Jure Murgic; Emilie Lalonde; Vinayak Bhandari; Osman Mahamud; Anuradha Gopalan; Charlotte F Kweldam; Geert J L H van Leenders; Esther I Verhoef; Agnes Marije Hoogland; Julie Livingstone; Alejandro Berlin; Alan Dal Pra; Alice Meng; Junyan Zhang; Michèle Orain; Valérie Picard; Hélène Hovington; Alain Bergeron; Louis Lacombe; Yves Fradet; Bernard Têtu; Victor E Reuter; Neil Fleshner; Michael Fraser; Paul C Boutros; Theodorus H van der Kwast; Robert G Bristow
Journal:  Eur Urol       Date:  2017-05-13       Impact factor: 20.096

4.  New Prostate Cancer Grading System Predicts Long-term Survival Following Surgery for Gleason Score 8-10 Prostate Cancer.

Authors:  Won Sik Ham; Heather J Chalfin; Zhaoyong Feng; Bruce J Trock; Jonathan I Epstein; Carling Cheung; Elizabeth Humphreys; Alan W Partin; Misop Han
Journal:  Eur Urol       Date:  2016-11-19       Impact factor: 20.096

5.  Associations of Luminal and Basal Subtyping of Prostate Cancer With Prognosis and Response to Androgen Deprivation Therapy.

Authors:  Shuang G Zhao; S Laura Chang; Nicholas Erho; Menggang Yu; Jonathan Lehrer; Mohammed Alshalalfa; Corey Speers; Matthew R Cooperberg; Won Kim; Charles J Ryan; Robert B Den; Stephen J Freedland; Edwin Posadas; Howard Sandler; Eric A Klein; Peter Black; Roland Seiler; Scott A Tomlins; Arul M Chinnaiyan; Robert B Jenkins; Elai Davicioni; Ashley E Ross; Edward M Schaeffer; Paul L Nguyen; Peter R Carroll; R Jeffrey Karnes; Daniel E Spratt; Felix Y Feng
Journal:  JAMA Oncol       Date:  2017-12-01       Impact factor: 31.777

6.  Transcriptomic Heterogeneity of Androgen Receptor Activity Defines a de novo low AR-Active Subclass in Treatment Naïve Primary Prostate Cancer.

Authors:  Daniel E Spratt; Mohammed Alshalalfa; Nick Fishbane; Adam B Weiner; Rohit Mehra; Brandon A Mahal; Jonathan Lehrer; Yang Liu; Shuang G Zhao; Corey Speers; Todd M Morgan; Adam P Dicker; Stephen J Freedland; R Jeffery Karnes; Sheila Weinmann; Elai Davicioni; Ashley E Ross; Robert B Den; Paul L Nguyen; Felix Y Feng; Tamara L Lotan; Arul M Chinnaiyan; Edward M Schaeffer
Journal:  Clin Cancer Res       Date:  2019-09-12       Impact factor: 12.531

7.  Surgery vs Radiotherapy in the Management of Biopsy Gleason Score 9-10 Prostate Cancer and the Risk of Mortality.

Authors:  Derya Tilki; Ming-Hui Chen; Jing Wu; Hartwig Huland; Markus Graefen; Michelle Braccioforte; Brian J Moran; Anthony V D'Amico
Journal:  JAMA Oncol       Date:  2019-02-01       Impact factor: 31.777

Review 8.  The 2014 International Society of Urological Pathology (ISUP) Consensus Conference on Gleason Grading of Prostatic Carcinoma: Definition of Grading Patterns and Proposal for a New Grading System.

Authors:  Jonathan I Epstein; Lars Egevad; Mahul B Amin; Brett Delahunt; John R Srigley; Peter A Humphrey
Journal:  Am J Surg Pathol       Date:  2016-02       Impact factor: 6.394

9.  ConsensusClusterPlus: a class discovery tool with confidence assessments and item tracking.

Authors:  Matthew D Wilkerson; D Neil Hayes
Journal:  Bioinformatics       Date:  2010-04-28       Impact factor: 6.937

10.  The Molecular Signatures Database (MSigDB) hallmark gene set collection.

Authors:  Arthur Liberzon; Chet Birger; Helga Thorvaldsdóttir; Mahmoud Ghandi; Jill P Mesirov; Pablo Tamayo
Journal:  Cell Syst       Date:  2015-12-23       Impact factor: 10.304

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  5 in total

1.  Comparative analysis of 1152 African-American and European-American men with prostate cancer identifies distinct genomic and immunological differences.

Authors:  Walter Rayford; Alp Tuna Beksac; Jordan Alger; Mohammed Alshalalfa; Mohsen Ahmed; Irtaza Khan; Ugo G Falagario; Yang Liu; Elai Davicioni; Daniel E Spratt; Edward M Schaeffer; Felix Y Feng; Brandon Mahal; Paul L Nguyen; Robert B Den; Mark D Greenberger; Randy Bradley; Justin M Watson; Matthew Beamer; Lambros Stamatakis; Darrell J Carmen; Shivanshu Awasthi; Jonathan Hwang; Rachel Weil; Harri Merisaari; Nihal Mohamed; Leslie A Deane; Dimple Chakravarty; Kamlesh K Yadav; Kosj Yamoah; Sujit S Nair; Ashutosh K Tewari
Journal:  Commun Biol       Date:  2021-06-03

Review 2.  Proteomic discovery of non-invasive biomarkers of localized prostate cancer using mass spectrometry.

Authors:  Amanda Khoo; Lydia Y Liu; Julius O Nyalwidhe; O John Semmes; Danny Vesprini; Michelle R Downes; Paul C Boutros; Stanley K Liu; Thomas Kislinger
Journal:  Nat Rev Urol       Date:  2021-08-27       Impact factor: 14.432

3.  Performance of a Prostate-Specific Membrane Antigen Positron Emission Tomography/Computed Tomography-Derived Risk-Stratification Tool for High-risk and Very High-risk Prostate Cancer.

Authors:  Michael Xiang; Ting Martin Ma; Ricky Savjani; Erqi L Pollom; R Jeffrey Karnes; Tristan Grogan; Jessica K Wong; Giovanni Motterle; Jeffrey J Tosoian; Bruce J Trock; Eric A Klein; Bradley J Stish; Robert T Dess; Daniel E Spratt; Avinash Pilar; Chandana Reddy; Rebecca Levin-Epstein; Trude B Wedde; Wolfgang A Lilleby; Ryan Fiano; Gregory S Merrick; Richard G Stock; D Jeffrey Demanes; Brian J Moran; Hartwig Huland; Phuoc T Tran; Santiago Martin; Rafael Martinez-Monge; Daniel J Krauss; Eyad I Abu-Isa; Ridwan Alam; Zeyad Schwen; Thomas M Pisansky; C Richard Choo; Daniel Y Song; Stephen Greco; Curtiland Deville; Todd McNutt; Theodore L DeWeese; Ashley E Ross; Jay P Ciezki; Paul C Boutros; Nicholas G Nickols; Prashant Bhat; David Shabsovich; Jesus E Juarez; Natalie Chong; Patrick A Kupelian; Matthew B Rettig; Nicholas G Zaorsky; Alejandro Berlin; Jonathan D Tward; Brian J Davis; Robert E Reiter; Michael L Steinberg; David Elashoff; Eric M Horwitz; Rahul D Tendulkar; Derya Tilki; Johannes Czernin; Andrei Gafita; Tahmineh Romero; Jeremie Calais; Amar U Kishan
Journal:  JAMA Netw Open       Date:  2021-12-01

Review 4.  Understanding and targeting prostate cancer cell heterogeneity and plasticity.

Authors:  Dean G Tang
Journal:  Semin Cancer Biol       Date:  2021-11-26       Impact factor: 17.012

5.  Mesenchymal and stem-like prostate cancer linked to therapy-induced lineage plasticity and metastasis.

Authors:  Hyunho Han; Yan Wang; Josue Curto; Sreeharsha Gurrapu; Sara Laudato; Alekya Rumandla; Goutam Chakraborty; Xiaobo Wang; Hong Chen; Yan Jiang; Dhiraj Kumar; Emily G Caggiano; Monica Capogiri; Boyu Zhang; Yan Ji; Sankar N Maity; Min Hu; Shanshan Bai; Ana M Aparicio; Eleni Efstathiou; Christopher J Logothetis; Nicholas Navin; Nora M Navone; Yu Chen; Filippo G Giancotti
Journal:  Cell Rep       Date:  2022-04-05       Impact factor: 9.995

  5 in total

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