Literature DB >> 32460360

How to Transition from Single-Gene Pharmacogenetic Testing to Preemptive Panel-Based Testing: A Tutorial.

Richard J Marrero1, Emily J Cicali1,2, Meghan J Arwood1,2, Elizabeth Eddy1,2, David DeRemer1,2, Brian H Ramnaraign3, Karen C Daily3, Dennie Jones3, Kelsey J Cook1, Larisa H Cavallari1,2, Kristin Wiisanen Weitzel1,2, Taimour Langaee1,2, Kimberly J Newsom4, Petr Starostik4, Michael J Clare-Salzer4, Julie A Johnson1,2, Thomas J George3, Rhonda M Cooper-DeHoff1,2.   

Abstract

There have been significant advancements in precision medicine and approaches to medication selection based on pharmacogenetic results. With the availability of direct-to-consumer genetic testing and growing awareness of genetic interindividual variability, patient demand for more precise, individually tailored drug regimens is increasing. The University of Florida (UF) Health Precision Medicine Program (PMP) was established in 2011 to improve integration of genomic data into clinical practice. In the ensuing years, the UF Health PMP has successfully implemented several single-gene tests to optimize the precision of medication prescribing across a variety of clinical settings. Most recently, the UF Health PMP launched a custom-designed pharmacogenetic panel, including pharmacogenes relevant to supportive care medications commonly prescribed to patients undergoing chemotherapy treatment, referred to as "GatorPGx." This tutorial provides guidance and information to institutions on how to transition from the implementation of single-gene pharmacogenetic testing to a preemptive panel-based testing approach. Here, we demonstrate application of the preemptive panel in the setting of an adult solid tumor oncology clinic. Importantly, the information included herein can be applied to other clinical practice settings.
© 2020 The Authors Clinical Pharmacology & Therapeutics © 2020 American Society for Clinical Pharmacology and Therapeutics.

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Year:  2020        PMID: 32460360      PMCID: PMC7704727          DOI: 10.1002/cpt.1912

Source DB:  PubMed          Journal:  Clin Pharmacol Ther        ISSN: 0009-9236            Impact factor:   6.875


  42 in total

1.  Useless until proven effective: the clinical utility of preemptive pharmacogenetic testing.

Authors:  A C J W Janssens; P A Deverka
Journal:  Clin Pharmacol Ther       Date:  2014-12       Impact factor: 6.875

Review 2.  Pharmacogenomics in the clinic.

Authors:  Mary V Relling; William E Evans
Journal:  Nature       Date:  2015-10-15       Impact factor: 49.962

Review 3.  Recommendations for Clinical CYP2C19 Genotyping Allele Selection: A Report of the Association for Molecular Pathology.

Authors:  Victoria M Pratt; Andria L Del Tredici; Houda Hachad; Yuan Ji; Lisa V Kalman; Stuart A Scott; Karen E Weck
Journal:  J Mol Diagn       Date:  2018-02-21       Impact factor: 5.568

4.  Design and rational for the precision medicine guided treatment for cancer pain pragmatic clinical trial.

Authors:  Scott A Mosley; J Kevin Hicks; Diane G Portman; Kristine A Donovan; Priya Gopalan; Jessica Schmit; Jason Starr; Natalie Silver; Yan Gong; Taimour Langaee; Michael Clare-Salzler; Petr Starostik; Young D Chang; Sahana Rajasekhara; Joshua E Smith; Heloisa P Soares; Thomas J George; Howard L McLeod; Larisa H Cavallari
Journal:  Contemp Clin Trials       Date:  2018-03-10       Impact factor: 2.226

5.  A prognostic model based on readily available clinical data enriched a pre-emptive pharmacogenetic testing program.

Authors:  Jonathan S Schildcrout; Yaping Shi; Ioana Danciu; Erica Bowton; Julie R Field; Jill M Pulley; Melissa A Basford; William Gregg; James D Cowan; Frank E Harrell; Dan M Roden; Josh F Peterson; Joshua C Denny
Journal:  J Clin Epidemiol       Date:  2015-11-25       Impact factor: 6.437

6.  Clinical pharmacogenetics implementation consortium guideline (CPIC) for CYP2D6 and CYP2C19 genotypes and dosing of tricyclic antidepressants: 2016 update.

Authors:  J K Hicks; K Sangkuhl; J J Swen; V L Ellingrod; D J Müller; K Shimoda; J R Bishop; E D Kharasch; T C Skaar; A Gaedigk; H M Dunnenberger; T E Klein; K E Caudle; J C Stingl
Journal:  Clin Pharmacol Ther       Date:  2017-02-13       Impact factor: 6.875

7.  The utility of DNA extracted from saliva for genome-wide molecular research platforms.

Authors:  Fiona J Bruinsma; Jihoon E Joo; Ee Ming Wong; Graham G Giles; Melissa C Southey
Journal:  BMC Res Notes       Date:  2018-01-08

8.  Implementation of Standardized Clinical Processes for TPMT Testing in a Diverse Multidisciplinary Population: Challenges and Lessons Learned.

Authors:  Kristin W Weitzel; D Max Smith; Amanda R Elsey; Benjamin Q Duong; Benjamin Burkley; Michael Clare-Salzler; Yan Gong; Tara A Higgins; Benjamin Kong; Taimour Langaee; Caitrin W McDonough; Benjamin J Staley; Teresa T Vo; Dyson T Wake; Larisa H Cavallari; Julie A Johnson
Journal:  Clin Transl Sci       Date:  2018-01-19       Impact factor: 4.689

Review 9.  Proton pump inhibitors: from CYP2C19 pharmacogenetics to precision medicine.

Authors:  Nihal El Rouby; John J Lima; Julie A Johnson
Journal:  Expert Opin Drug Metab Toxicol       Date:  2018-04-12       Impact factor: 4.481

10.  A Decision-Theoretic Approach to Panel-Based, Preemptive Genotyping.

Authors:  Yaping Shi; John A Graves; Shawn P Garbett; Zilu Zhou; Ramya Marathi; Xiaoming Wang; Frank E Harrell; Thomas A Lasko; Joshua C Denny; Dan M Roden; Josh F Peterson; Jonathan S Schildcrout
Journal:  MDM Policy Pract       Date:  2019-08-17
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  8 in total

Review 1.  Advancing Pharmacogenomics from Single-Gene to Preemptive Testing.

Authors:  Cyrine E Haidar; Kristine R Crews; James M Hoffman; Mary V Relling; Kelly E Caudle
Journal:  Annu Rev Genomics Hum Genet       Date:  2022-05-10       Impact factor: 9.340

Review 2.  Pharmacogenetics to guide cardiovascular drug therapy.

Authors:  Julio D Duarte; Larisa H Cavallari
Journal:  Nat Rev Cardiol       Date:  2021-05-05       Impact factor: 32.419

3.  Implementation of preemptive DNA sequence-based pharmacogenomics testing across a large academic medical center: The Mayo-Baylor RIGHT 10K Study.

Authors:  Liewei Wang; Steven E Scherer; Suzette J Bielinski; Donna M Muzny; Leila A Jones; John Logan Black; Ann M Moyer; Jyothsna Giri; Richard R Sharp; Eric T Matey; Jessica A Wright; Lance J Oyen; Wayne T Nicholson; Mathieu Wiepert; Terri Sullard; Timothy B Curry; Carolyn R Rohrer Vitek; Tammy M McAllister; Jennifer L St Sauver; Pedro J Caraballo; Konstantinos N Lazaridis; Eric Venner; Xiang Qin; Jianhong Hu; Christie L Kovar; Viktoriya Korchina; Kimberly Walker; HarshaVardhan Doddapaneni; Tsung-Jung Wu; Ritika Raj; Shawn Denson; Wen Liu; Gauthami Chandanavelli; Lan Zhang; Qiaoyan Wang; Divya Kalra; Mary Beth Karow; Kimberley J Harris; Hugues Sicotte; Sandra E Peterson; Amy E Barthel; Brenda E Moore; Jennifer M Skierka; Michelle L Kluge; Katrina E Kotzer; Karen Kloke; Jessica M Vander Pol; Heather Marker; Joseph A Sutton; Adrijana Kekic; Ashley Ebenhoh; Dennis M Bierle; Michael J Schuh; Christopher Grilli; Sara Erickson; Audrey Umbreit; Leah Ward; Sheena Crosby; Eric A Nelson; Sharon Levey; Michelle Elliott; Steve G Peters; Naveen Pereira; Mark Frye; Fadi Shamoun; Matthew P Goetz; Iftikhar J Kullo; Robert Wermers; Jan A Anderson; Christine M Formea; Razan M El Melik; John D Zeuli; Joseph R Herges; Carrie A Krieger; Robert W Hoel; Jodi L Taraba; Scott R St Thomas; Imad Absah; Matthew E Bernard; Stephanie R Fink; Andrea Gossard; Pamela L Grubbs; Therese M Jacobson; Paul Takahashi; Sharon C Zehe; Susan Buckles; Michelle Bumgardner; Colette Gallagher; Kelliann Fee-Schroeder; Nichole R Nicholas; Melody L Powers; Ahmed K Ragab; Darcy M Richardson; Anthony Stai; Jaymi Wilson; Joel E Pacyna; Janet E Olson; Erica J Sutton; Annika T Beck; Caroline Horrow; Krishna R Kalari; Nicholas B Larson; Hongfang Liu; Liwei Wang; Guilherme S Lopes; Bijan J Borah; Robert R Freimuth; Ye Zhu; Debra J Jacobson; Matthew A Hathcock; Sebastian M Armasu; Michaela E McGree; Ruoxiang Jiang; Tyler H Koep; Jason L Ross; Matthew G Hilden; Kathleen Bosse; Bronwyn Ramey; Isabelle Searcy; Eric Boerwinkle; Richard A Gibbs; Richard M Weinshilboum
Journal:  Genet Med       Date:  2022-03-21       Impact factor: 8.864

4.  Design and Early Implementation Successes and Challenges of a Pharmacogenetics Consult Clinic.

Authors:  Meghan J Arwood; Eric A Dietrich; Benjamin Q Duong; D Max Smith; Kelsey Cook; Amanda Elchynski; Eric I Rosenberg; Katherine N Huber; Ying L Nagoshi; Ashleigh Wright; Jeffrey T Budd; Neal P Holland; Edlira Maska; Danielle Panna; Amanda R Elsey; Larisa H Cavallari; Kristin Wiisanen; Julie A Johnson; John G Gums
Journal:  J Clin Med       Date:  2020-07-17       Impact factor: 4.241

5.  Assessment of a Manual Method versus an Automated, Probability-Based Algorithm to Identify Patients at High Risk for Pharmacogenomic Adverse Drug Outcomes in a University-Based Health Insurance Program.

Authors:  Kendra J Grande; Rachel Dalton; Nicolas A Moyer; Meghan J Arwood; Khoa A Nguyen; Jill Sumfest; Kristine C Ashcraft; Rhonda M Cooper-DeHoff
Journal:  J Pers Med       Date:  2022-01-26

6.  Characterizing pharmacogenetic programs using the consolidated framework for implementation research: A structured scoping review.

Authors:  John H McDermott; Stuart Wright; Videha Sharma; William G Newman; Katherine Payne; Paul Wilson
Journal:  Front Med (Lausanne)       Date:  2022-08-18

7.  Clinical Utility of Pharmacogenomic Data Collected by a Health-System Biobank to Predict and Prevent Adverse Drug Events.

Authors:  Sonam N Shah; Roseann S Gammal; Mary G Amato; Maryam Alobaidly; Dariel Delos Reyes; Sarah Hasan; Diane L Seger; Joel B Krier; David W Bates
Journal:  Drug Saf       Date:  2021-02-23       Impact factor: 5.606

8.  Multisite investigation of strategies for the clinical implementation of pre-emptive pharmacogenetic testing.

Authors:  Julio D Duarte; Rachel Dalton; Amanda L Elchynski; D Max Smith; Emily J Cicali; James C Lee; Benjamin Q Duong; Natasha J Petry; Christina L Aquilante; Amber L Beitelshees; Philip E Empey; Julie A Johnson; Aniwaa Owusu Obeng; Amy L Pasternak; Victoria M Pratt; Laura B Ramsey; Sony Tuteja; Sara L Van Driest; Kristin Wiisanen; J Kevin Hicks; Larisa H Cavallari
Journal:  Genet Med       Date:  2021-07-19       Impact factor: 8.822

  8 in total

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